Rneb040605.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411310.1:136991723-136999416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.1e-05 0.011 17.5 0.1 1 23 119 142 119 142 0.96 2 10 0.00062 0.13 14.1 0.4 2 23 152 174 151 174 0.97 3 10 0.00013 0.027 16.3 4.4 1 23 180 202 180 202 0.97 4 10 8e-06 0.0017 20.1 0.7 1 23 209 232 209 232 0.97 5 10 0.0012 0.25 13.2 1.3 1 23 238 261 238 261 0.95 6 10 0.0001 0.022 16.6 4.3 1 23 267 289 267 290 0.95 7 10 0.00028 0.059 15.2 4.0 1 23 296 319 296 319 0.97 8 10 0.00023 0.047 15.5 1.1 2 23 326 347 325 348 0.95 9 10 1.9e-05 0.004 18.9 2.9 1 23 354 376 354 377 0.95 10 10 0.00012 0.026 16.3 2.5 1 23 383 406 383 406 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAAATAGTTACAGGAGCAGATTTGGTAACTCCTTGCTGTGTCTTTATCAAGGAAGAAAATGGTGATGGTGGAGATGCTGATAATGAAAATATTGTTAAGAATGAAGTAAAAAATGAATTTGACTGCATTTTACTGTCACCTGATAGCCAGCCTCTGGAAGTTTTGCTAGAAGAAGAAAGCGATAAAAAATCTAATGTACAGTTATATAAAAAAGAGAAGAATGAAGTAATTGACAATGAAAGATGTCTTATAGCCGACGATGATGCACAGTATGACTACGACAAAGAAATTGAAGATGAAAACAATGACGAATGCTTGCCAACTAATGATGCGCAATGTAGCATGGGTTTTGCCTGTTCCTATTGCGGTGCAATGTTTGAAAACTATAGAGCATTAGAATTACATATTAAAGTAACACATTTGCATAAATTATCAGAAACTGAAATtcaatgccgtttctgtgattatatatcagacagcactattgatctgaaaaagcatatgcgaactgctcataaaaaggaaaagccctaccactgtacagtatgtgattataagtcgtccaatagcaatcatttgaaaaagcacatcatggcccattacccagatcagaaaccctatcaatgcccatactgtgactacaaggcagttcacccgaccaatctcaaaacacatatactatccgaccacaagaacgaaaaaccatatgtttgtaatatgtgcgactttaaaactgcataccctcatgaattgaaaacacatacgatggctcgccacactaatcaaaaacctcacaaatgctccctttgcgattacagcactgcctattccagtaacttgaggaagcatactatggcccatcatacaagcgaaaggccgtatcaatgtacactttgccaatatagaaccacaaactccaatcatttaaagacccatacaatggttaatcatactaatcagaagcctaatcagtgtacgatgtgcgattataaaactgtgtttgcaagtgcactaaaacgccacgttatggttcaccatacaaatgaaagacctttccgatgttccgattgtgattacaaatcagccaatgccagtcatctcaaaaggcatgtcatggcccatcatactgatgagaaaccccatcagtgcgttttttgtgattacaaaagttctcagcttggaaacttaaaaaggcatatTAGGGAAAAGCATTCAAAACTTACAACGCCTGCATAA
- Protein Sequence
- MAEIVTGADLVTPCCVFIKEENGDGGDADNENIVKNEVKNEFDCILLSPDSQPLEVLLEEESDKKSNVQLYKKEKNEVIDNERCLIADDDAQYDYDKEIEDENNDECLPTNDAQCSMGFACSYCGAMFENYRALELHIKVTHLHKLSETEIQCRFCDYISDSTIDLKKHMRTAHKKEKPYHCTVCDYKSSNSNHLKKHIMAHYPDQKPYQCPYCDYKAVHPTNLKTHILSDHKNEKPYVCNMCDFKTAYPHELKTHTMARHTNQKPHKCSLCDYSTAYSSNLRKHTMAHHTSERPYQCTLCQYRTTNSNHLKTHTMVNHTNQKPNQCTMCDYKTVFASALKRHVMVHHTNERPFRCSDCDYKSANASHLKRHVMAHHTDEKPHQCVFCDYKSSQLGNLKRHIREKHSKLTTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764073;
- 90% Identity
- iTF_00764073;
- 80% Identity
- -