Rneb007212.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:167807246-167809680[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00042 0.089 14.6 2.8 2 23 108 129 107 129 0.96 2 11 7.1e-06 0.0015 20.2 8.6 1 23 179 201 179 201 0.98 3 11 0.00026 0.055 15.3 0.5 1 23 207 229 207 229 0.98 4 11 3.8e-06 0.0008 21.1 5.5 1 23 235 257 235 257 0.98 5 11 0.004 0.84 11.6 4.8 1 21 263 283 263 285 0.94 6 11 5.8e-05 0.012 17.3 2.4 1 23 291 313 291 313 0.99 7 11 9.2 1.9e+03 1.0 0.3 1 16 318 332 318 334 0.76 8 11 6.4e-07 0.00013 23.5 2.5 2 23 338 359 337 359 0.98 9 11 7.4e-06 0.0016 20.2 0.9 1 23 365 387 365 387 0.99 10 11 1.5e-07 3.1e-05 25.5 1.7 1 23 393 415 393 415 0.99 11 11 7.9e-07 0.00017 23.2 4.1 1 23 421 443 421 443 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAATTAAGAATTTCACAACTGTTGCAGAAGATAAACAAAATATGGAACAAAGAAGAAGAACGATAAGAAAGGCAGCTCCTACAAGATGCAATAATTGCTCTGAAGAAACTAAATATCTCCTTAGCCATTATGAAGCATGTGCATCAACATCCATTGAAACTTTAAAAAATAAGGTAACACAATATAAAGATAAACTAAGCAGTGTTTCAGGAGTCGACAATTTTGAAAGAGCTCGATTTTATATTGAGACAGACACTAAAACAAATATTGATAAAGCATCAGAATTGCGTGAAGGTTGTATAAAAAAACGACTCAAGTGCAAATTTTGCATTAAGAATTTCACAAGGCAAAACTATTTGTCGAGACACATGGATTCTCACAAAATAAATGATGAGGCAACAGAACATGGTGACCAAACTAGCGAATCATTAGTTGCCAACGTTGACAGACTAGAGTCTAATAACGATACAGAAATGGAAACAAGAAGTAATAAAGATTTGCAGTTAAATGATTCTACAGAAAAACTACACAAATGTCAGTATTGCACTAAGACTTTTGCGAGGCGAAACTGTTTATCAAGGCATATGAGGACACACACAGGAGAGCGACCTTATGTATGTTCTGTCTGCGAGAGGAGATTCGTAGAACATGGAGCAATGAGAGTGCACTACAGAATTCATACCGGAGAGCGGCCATTCACATGCACCCTCTGCAGTAGAACTTTCCGTCACAAGAGTAATTTGACATTGCATGAAAGAAGGCATTTTAATGACAAACGTTACAAGTGTCCTTTGTGTCCAAAAAAATTCATCAGCCCTGGAAACTGTAAAAAACATGAAAGGTGTCATTCAAAAGAGAAAATATATAAGTGTGAAGAATGTTTTCAAAGTTTCAAAACAGGTAAAGGATTGACAAAGCATACAATGAAGCATAAAAATAGCATCCATAAGTGTCGTGTATGCCTAAAGGACTCTAGTAGTTCCAATCTAAAAGAACAGATGACAAAGTGTGAATTATGTGAAAAAACATTTACTAAGTCTAGTTCATTGAAAATACACTATAGAACTCATACGGGCGAGAAACCTTATAAATGCGAAACTTGCTACAAAAGCTATGCTAGACTTGGAACATTGATGAAACATTTAAATGTACATACAGGAGATAAATTATATAAGTGCAATGAATGTAATAAGGCTTTCACTCGGCAATTCAGTTTGGCAGTACACAAGAGAATGCATACAGGAGCAAAACCATACCATTGCGAATTGTGTAATAAATTTTTTACACAACTATCTAATTTAAATAGACACTTGTCAACACATAATACAAACTTTCAAGAATGA
- Protein Sequence
- MNEIKNFTTVAEDKQNMEQRRRTIRKAAPTRCNNCSEETKYLLSHYEACASTSIETLKNKVTQYKDKLSSVSGVDNFERARFYIETDTKTNIDKASELREGCIKKRLKCKFCIKNFTRQNYLSRHMDSHKINDEATEHGDQTSESLVANVDRLESNNDTEMETRSNKDLQLNDSTEKLHKCQYCTKTFARRNCLSRHMRTHTGERPYVCSVCERRFVEHGAMRVHYRIHTGERPFTCTLCSRTFRHKSNLTLHERRHFNDKRYKCPLCPKKFISPGNCKKHERCHSKEKIYKCEECFQSFKTGKGLTKHTMKHKNSIHKCRVCLKDSSSSNLKEQMTKCELCEKTFTKSSSLKIHYRTHTGEKPYKCETCYKSYARLGTLMKHLNVHTGDKLYKCNECNKAFTRQFSLAVHKRMHTGAKPYHCELCNKFFTQLSNLNRHLSTHNTNFQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -