Rneb040482.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411310.1:134364306-134380982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.012 2.4 10.1 7.1 1 23 156 178 156 178 0.98 2 26 0.014 2.9 9.9 1.7 1 23 184 207 184 207 0.94 3 26 0.00011 0.024 16.4 3.2 1 23 213 236 213 236 0.95 4 26 0.0014 0.3 13.0 6.7 1 23 242 265 242 265 0.97 5 26 0.00013 0.027 16.3 1.4 1 23 271 294 271 294 0.95 6 26 0.00013 0.027 16.3 3.0 1 23 300 323 300 323 0.95 7 26 0.012 2.6 10.0 4.2 1 23 329 352 329 352 0.95 8 26 0.0013 0.27 13.1 6.2 1 23 358 380 358 381 0.96 9 26 1.2 2.6e+02 3.8 2.0 1 23 387 412 387 412 0.94 10 26 0.00098 0.21 13.5 1.8 1 23 418 441 418 441 0.97 11 26 0.01 2.1 10.3 5.7 1 23 447 470 447 470 0.95 12 26 0.00035 0.073 14.9 3.2 1 23 476 499 476 499 0.95 13 26 0.0034 0.72 11.8 2.6 1 23 505 528 505 528 0.95 14 26 0.011 2.2 10.2 2.8 1 23 534 557 534 557 0.93 15 26 0.00016 0.033 16.0 1.0 1 23 563 586 563 586 0.97 16 26 0.033 6.9 8.7 3.1 1 23 592 615 592 615 0.94 17 26 0.01 2.1 10.3 5.7 1 23 621 644 621 644 0.95 18 26 0.00028 0.06 15.2 2.9 1 23 650 673 650 673 0.95 19 26 0.0022 0.47 12.4 2.5 1 23 679 701 679 702 0.95 20 26 0.0033 0.69 11.8 1.7 1 23 708 731 708 731 0.93 21 26 0.002 0.43 12.5 3.8 1 23 737 759 737 760 0.95 22 26 0.0047 0.98 11.4 4.3 2 23 767 788 766 788 0.96 23 26 0.00016 0.033 16.0 3.4 1 23 794 817 794 817 0.95 24 26 0.00013 0.027 16.3 4.4 1 23 823 846 823 846 0.98 25 26 0.11 23 7.1 1.3 1 23 881 904 881 904 0.95 26 26 0.0041 0.85 11.5 3.1 2 23 911 933 910 933 0.93
Sequence Information
- Coding Sequence
- ATGACTGATGAAACTATGTCTTCGCCAGGTGAGCTTGTTCGTGTGAAACAAGAAAGAGAGATGCTTATTCCAGATGAAGTTCCCGCAATTGGTATCAAAGATGAGGAGGGGATGGAGATTTATTATGCAGGTGAGCTTGTTCCTGTGAAACAAGAAAGAGAGATGCTTTTTCCAGATGAAGTTCCCACAATGAGTATTAAAGAAGAGGAGGGGCAGGAGATTTATTATGGTGGGTTTACTCATGTGAAACATGAAGAACTGCTTATCCCGGATGAAGATTCAAGTCCTTCTCTCTCCATAGAGCAGTTGGGTGATTCAAGTCCAGATTTGGATTTTGTAGTGGATGAGCAAGATTTAGAATCCTATGACACATCTTCAGATGATGATGTTCTGAGCAAAAGGAATAAAAAGGAGAAGAAAATTAAAGAAGgtgccaaagataattgccatagatgcgagaagccttatcactgtcctcactgtgatcataaatgtattacacttcaagcaatgaaaagacatatggcccgtcatacaagtgagaagcctcatcattgtcctaactgtgtttataaatctgtttcactatatgatttgaaaagacatataatggcccttcatacaggtgagaagccttatgaatgtcatcattgtgacttcaaatctgttacaagctatgatttgaaaagacatataatggcccttcatacaggtgaaaagccttatcaatgtcatcattgtgacttcaaatctgttacatctcatgatttgaaaaaacatgttatggtccgtcatactggtgaaaagcctcaccaatgccctcaatgtgattataaatctgttagaagtcaagatttgaaaaaacatataatggcccgacatacaggtaagatgcctcatcaatgtcctcactgtgattataaatctgttagaagtcaagatttgaaaaaacatataatggcccgtcatacaggtaagaagccttaccattgttctcaatgtgattataaatctgtttcatttcatgatttgaaaagacatataatggcccgtcatacaggtgagaagccttaccactgttcggaatgtgattataaatgtgttaaacctcaaggtttgaaaacacatatgatgacccaccatacatgggagaagcctcatcaatgtgattatccccagtgtgattataaatctgttaaacctaaatgtatgaaagaacatataatggctcttcatacagttgagaagccttatcactgttctcaatgtgattataaatctgtttcatctaatggtttgaaaagacatataatggtccgccatacaagtgagaggcctcatcactgtcctcaatgtgattataaatctgtttcatctcatgaattaaaaaaacatacaatggttcgccattcgggtgagaagcctcatcagtgtcctcactgtgattacaaatctgtcacacatgaactcttgaaaagacatataatggccattcatacaggtgaaaagccttaccactgttctcaatgtgattataaatctgtttcattttatgatctgaaaagacatataatggcccgtcatacaagtgagaggcctcatcactgtcctcaatgtgattttaaatctgtttcatctggtgatttgaaaaagcatacaatggctcgtcattcaggtgagaagcctcatcagtgtcctcactgtgattacaaaactgtcgcgcctgaactcttgaaaagacatataatgtccattcatacaggtgagaagccttaccactgttctcagtgtgattataaatctgtttcatttcaggatttgaaaagacatacaatggcccgtcatacaggtgagaggcctcatcactgtcctcaatgtgattataaatctgtttcatctcatgaattgaaaaaacatacaatggttcgccattcaggtgagaagcctcatcagtgtcctcactgtgattacaaaactgtcaaatctgaactcttgaaaaaacatataatggcccgtcatacaggtgaaaagcctcatcaatgccctcaatgtgattataaatctgttacaggtaaacagttgaaaaatcatatcatggcccatcatacaggtgagaagccttatctatgtcctcactgtgattacaaagctgttcaaatacaacacctgaaaagacatataatggcccgtcatacaggtgaaaagcctcatcaatgccttaaatgtgattataaatctgttacacgtcaagagttaaagaaccatataatggtgcatcatacaaacaataatcctattcactgtcctcactgtgatcataaatctattacacttcaagctttgaaaagacatatggcccgtcatataggtgttatgcctcatcaatgccctaaatgtgattatagaactgttacacactatgagttgaaaagacatataatggcccgtcacacaggtgaaaaacctcatcaatgccctcaatgtgattataaatctgttacacgtcaccagttgaataaacatataatgacctatcatacaggtgagaagcctcttcactgttctcagtatgattataaatctattggacgccaagctttgaaagaacatataatgggccatcaaactggtgaaaagctttatcaatgttatcattgcgactttgaatctgaagcacgtcaacagttaaaaagtcatatagtaatctatcatacaattgagaaacctcttcactgttctcaatgtgactataaatctgttacatctcatgatttgaaaaaacatataatggcctatcattcaggtgagaagcctcatcaatgtccttaa
- Protein Sequence
- MTDETMSSPGELVRVKQEREMLIPDEVPAIGIKDEEGMEIYYAGELVPVKQEREMLFPDEVPTMSIKEEEGQEIYYGGFTHVKHEELLIPDEDSSPSLSIEQLGDSSPDLDFVVDEQDLESYDTSSDDDVLSKRNKKEKKIKEGAKDNCHRCEKPYHCPHCDHKCITLQAMKRHMARHTSEKPHHCPNCVYKSVSLYDLKRHIMALHTGEKPYECHHCDFKSVTSYDLKRHIMALHTGEKPYQCHHCDFKSVTSHDLKKHVMVRHTGEKPHQCPQCDYKSVRSQDLKKHIMARHTGKMPHQCPHCDYKSVRSQDLKKHIMARHTGKKPYHCSQCDYKSVSFHDLKRHIMARHTGEKPYHCSECDYKCVKPQGLKTHMMTHHTWEKPHQCDYPQCDYKSVKPKCMKEHIMALHTVEKPYHCSQCDYKSVSSNGLKRHIMVRHTSERPHHCPQCDYKSVSSHELKKHTMVRHSGEKPHQCPHCDYKSVTHELLKRHIMAIHTGEKPYHCSQCDYKSVSFYDLKRHIMARHTSERPHHCPQCDFKSVSSGDLKKHTMARHSGEKPHQCPHCDYKTVAPELLKRHIMSIHTGEKPYHCSQCDYKSVSFQDLKRHTMARHTGERPHHCPQCDYKSVSSHELKKHTMVRHSGEKPHQCPHCDYKTVKSELLKKHIMARHTGEKPHQCPQCDYKSVTGKQLKNHIMAHHTGEKPYLCPHCDYKAVQIQHLKRHIMARHTGEKPHQCLKCDYKSVTRQELKNHIMVHHTNNNPIHCPHCDHKSITLQALKRHMARHIGVMPHQCPKCDYRTVTHYELKRHIMARHTGEKPHQCPQCDYKSVTRHQLNKHIMTYHTGEKPLHCSQYDYKSIGRQALKEHIMGHQTGEKLYQCYHCDFESEARQQLKSHIVIYHTIEKPLHCSQCDYKSVTSHDLKKHIMAYHSGEKPHQCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -