Basic Information

Insect: Rhaphigaster nebulosa
Gene Symbol: -
Assembly: GCA_948150685.1
Location: OX411307.1:89982262-89984601[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.7 3.5e+02 3.3 0.1 1 23 216 238 216 238 0.94

2 18 0.00072 0.15 13.9 2.5 1 23 244 266 244 266 0.98

3 18 0.038 8 8.5 0.3 2 21 274 293 273 294 0.92

4 18 8.6e-05 0.018 16.8 2.2 2 23 302 323 301 323 0.97

5 18 0.0022 0.46 12.4 0.4 2 23 330 352 329 352 0.90

6 18 5e-05 0.011 17.6 3.3 1 23 358 380 358 380 0.96

7 18 6.2e-07 0.00013 23.5 1.3 1 23 389 412 389 412 0.97

8 18 0.0079 1.7 10.6 0.2 1 23 422 444 422 445 0.94

9 18 0.044 9.3 8.3 0.8 1 23 466 488 466 488 0.97

10 18 0.0019 0.4 12.6 0.1 1 21 494 514 494 515 0.95

11 18 1.7 3.6e+02 3.3 0.8 1 23 535 557 535 557 0.90

12 18 0.25 52 5.9 0.1 1 23 563 585 563 585 0.96

13 18 1.7e-06 0.00035 22.2 0.8 1 23 601 623 601 623 0.99

14 18 8.8e-07 0.00019 23.1 0.5 1 23 629 651 629 651 0.98

15 18 0.0036 0.77 11.7 0.6 1 23 657 679 657 679 0.98

16 18 0.00051 0.11 14.4 3.4 1 23 685 707 685 707 0.98

17 18 5.3e-06 0.0011 20.6 0.9 1 23 713 735 713 735 0.99

18 18 1.3e-05 0.0027 19.4 0.6 3 23 743 764 742 764 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.7	3.5e+02	3.3	0.1	1	23	216	238	216	238	0.94
2	18	0.00072	0.15	13.9	2.5	1	23	244	266	244	266	0.98
3	18	0.038	8	8.5	0.3	2	21	274	293	273	294	0.92
4	18	8.6e-05	0.018	16.8	2.2	2	23	302	323	301	323	0.97
5	18	0.0022	0.46	12.4	0.4	2	23	330	352	329	352	0.90
6	18	5e-05	0.011	17.6	3.3	1	23	358	380	358	380	0.96
7	18	6.2e-07	0.00013	23.5	1.3	1	23	389	412	389	412	0.97
8	18	0.0079	1.7	10.6	0.2	1	23	422	444	422	445	0.94
9	18	0.044	9.3	8.3	0.8	1	23	466	488	466	488	0.97
10	18	0.0019	0.4	12.6	0.1	1	21	494	514	494	515	0.95
11	18	1.7	3.6e+02	3.3	0.8	1	23	535	557	535	557	0.90
12	18	0.25	52	5.9	0.1	1	23	563	585	563	585	0.96
13	18	1.7e-06	0.00035	22.2	0.8	1	23	601	623	601	623	0.99
14	18	8.8e-07	0.00019	23.1	0.5	1	23	629	651	629	651	0.98
15	18	0.0036	0.77	11.7	0.6	1	23	657	679	657	679	0.98
16	18	0.00051	0.11	14.4	3.4	1	23	685	707	685	707	0.98
17	18	5.3e-06	0.0011	20.6	0.9	1	23	713	735	713	735	0.99
18	18	1.3e-05	0.0027	19.4	0.6	3	23	743	764	742	764	0.97

Sequence Information

Coding Sequence: ATGACTGTTTTGGATGAAAATGGTGAAGAAGTTGTTTTAGGATCTTCGGCCAAGAATATTTTGAAGGGATGTTGTCCCTTATGTAATGAAGGAAATTTAAAAAGTGGGGAACGTTTTGCAGAAGATGATGATTTACTTCCTATGCAAGGAATAGATTCAATAGAACTAGGCGGTCAAGTTAATAGAAATAATTCTATTGATAAAGTTAGTGATGTCTTTTCAGAAAGTGAATTTACGTCAGAAAATGATACTGTTAAAAGAATGATGGGAATTAGGAATGATAAAAAAATGAGTGAGATTGCTTTTCCAAAAGTTAATTGTGATACTTCAGATTTAGATTCATTAGCTGAATCCTCACCATCTCAAGTTTTTAATAAAGAAGTAGATCCTCTTAAAATTGATGATAATTCGTCTAAAAGTGAAAGTGATCAAATAATTGAATGTTATTCATCGTTATCTTCTCCTTTAAATATATTAAGTACTGATGATTCTAATAGCAAAAACATGAATGAAGACCCCTTATCAGTATGTAATGAAGAATTGCAGATTGAACCAGACCTTTATTACATGGACACTGAATCTGAATCTGCAAATATCAATACTCAAGATAGCAATGAAAAAATAAGTAGTAGCTCCAAGCATCCTTTTGTTTGTCGTCTCTGTGCCTCCGAATTTGAAGAAAATATTGATCTTTTGCGACATGCTTTTGTCCATTCTTGTTACGGTTTTTATCAGTGTTCTAGTTGTGTTACATTCTTTACTACAAAAGATGAATTAGAAAATCATTTCAAATATCATGAATCGAAAGATAATACCATTTATTGTGATGTTTGTAATTTGGGTTTTAAATCAGCTTTAGACTTAGCGACACACACTTGTAAACAAGACAGTTTCCCTCCTAATAAATGCCCTGTGTGTTATAAATATTTTCGATCTGTTTCAAAACTCAAACAGCATATGAAATTCCACGAAGCTGCTCGGCCTTCTTATTGTAATATTTGTGACAAATTTTTTCCTGATGACATCAAGCTTCAAAAGCATTCCCTTTATGTTCACAGCTCTAGAAAAGCCCACTGTTGTGAAGAATGTGGTAAAGTTTTCAAATCTGAAGCCTCCATGAAATATCACCAAAGAGCCCATCAGGCTGAAGAAAGGATTAAACCTTATACATGTGAACGTTGTGGTAAATCATTTATGAGGAAAAGTATGTTAATCAATCATATGACTTCTTCACACAATCATACCAACTTTGAAACACCCTGCTTTACCTGTAAGCTTTGCAATGAAGCATTCCCAAGCACAGTAGCTGCTGTTGCTCATATGGATAATCATCATAAATTAGAATGTATGGATGAAGCTACCTATAGTTTTGAAATGCATACTATAAACCGTTTGTTTGTTTGTGAGTTTTGTGAGCGTTGTTATGCTGAAGGATCTGTTTTAAACTCACATCGTGAAATGCATCCATCTGATTCACCTTATGAATGTAAGCTTTGTGATGCAGTTTTCCCATCTAGTGAGGAAGTTAAAATTCATAGGAAAAATTATTCTAATGAAAAAATACCTGCTGAATATATTTCTGATTTTACTATACCTAAAACTTATTTGTGTGAATATTGTGAAAGATATTTCTTAAATTATGTCAAGTATTCCGAACATTTAACTGTTCACTATGGCCCAGAACCTTATCAATGCCGTTCATGTCCCTTAAAATTTGGTACTTTGGTTGATGCTATGGAGCATAGATCAATACATGGTGAATCACAGTTACAAGTAGACGAGTACAATTTTTATCGCCCATATGAATGCCACTACTGTAGCAAAACATTTGCTATAGAAGACGCATTAATAAAACATATCAGAATGCACACGGGCGAAAAACCCTTTATTTGTGATCAGTGTGGTAAAGGATTTTCACAAAGTTCTGGCCTTTATACTCATCAAAAAGTGCATTCTTCTGAACGACCTTATTCTTGTACAGTTTGTCCTAGAAAATTTAAGATTAAAGGTGACCGTGATGTTCATGTTAGGAAACACTCTGGAGATCGTCCTTATAAATGTGAATTTTGTGGTAAAGCTTTTATGACCCAACATGTTTATAGCCAACACAGAAAAATTCACACTGGAGAACGACCATATAAGTGTGATGTTTGTGGAATAGCATTTAGAAGATCTCATGTGCTTACAGTTCATAAAAGAATTCATACGGGTGAAAAACCTAATATTTGTGACATTTGTGGCAAAAGATACCGTCAAAAAGGTGATATGTTAAAACATCGAAGAGTTCAGCATGGTATATTGAGCACTAAACAAAATATTAATTCAATTGTGGACAGTTGA
Protein Sequence: MTVLDENGEEVVLGSSAKNILKGCCPLCNEGNLKSGERFAEDDDLLPMQGIDSIELGGQVNRNNSIDKVSDVFSESEFTSENDTVKRMMGIRNDKKMSEIAFPKVNCDTSDLDSLAESSPSQVFNKEVDPLKIDDNSSKSESDQIIECYSSLSSPLNILSTDDSNSKNMNEDPLSVCNEELQIEPDLYYMDTESESANINTQDSNEKISSSSKHPFVCRLCASEFEENIDLLRHAFVHSCYGFYQCSSCVTFFTTKDELENHFKYHESKDNTIYCDVCNLGFKSALDLATHTCKQDSFPPNKCPVCYKYFRSVSKLKQHMKFHEAARPSYCNICDKFFPDDIKLQKHSLYVHSSRKAHCCEECGKVFKSEASMKYHQRAHQAEERIKPYTCERCGKSFMRKSMLINHMTSSHNHTNFETPCFTCKLCNEAFPSTVAAVAHMDNHHKLECMDEATYSFEMHTINRLFVCEFCERCYAEGSVLNSHREMHPSDSPYECKLCDAVFPSSEEVKIHRKNYSNEKIPAEYISDFTIPKTYLCEYCERYFLNYVKYSEHLTVHYGPEPYQCRSCPLKFGTLVDAMEHRSIHGESQLQVDEYNFYRPYECHYCSKTFAIEDALIKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSSERPYSCTVCPRKFKIKGDRDVHVRKHSGDRPYKCEFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRVQHGILSTKQNINSIVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00165383;
90% Identity: iTF_00165383;
80% Identity: -