Rneb007952.4
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:185237182-185239121[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-10 2e-06 28.8 0.0 2 39 16 52 15 56 0.89 2 2 2.4 6e+03 -1.6 0.1 17 24 168 175 167 176 0.88
Sequence Information
- Coding Sequence
- ATGGTGCGAAATCGAGAGCGGAAGACCAGCAAGGGACTCTTTGTTGAAGATGACATGAAGGCAGCAGTGGAAATGGTCTTGGGCGGATGCAGTGTGAGACGTGCTGCTGCCCTAAAGAATGTGAATCATGTTACGTTATCAAGATATGTGAAGAAAACGAAAGAACGTGacttcttgtgcaattatgtgactgatcgaccGCCTGCTAGCACTGTGGATGATCAACCACCCAAGACATATGGTTATACTGTGCCAAGTGAGTCACCCAATGGTTCCCTCCCACAACTAGAAGAAGGAGCAGCTTCAAACCATGCAGAAATCAGTGCCCTTGATCCAGGAGCTGGTCCAAGTCAAACTTTCCTCTCTCCTGAAGATTTTCGTGGTTATCCAAAAGCAGGAGAACGAAAAATTGATCGAAAGCCGGGGAAGAAAGGCAAGAGTATGATAGCTACGAGCACTCCAGAAATGAGAGCGATTGCAGAAAAGAAAAAGCCGGTTCCACTTTCCATGAAGAAGGCAGCCAAACAAAAAATCAAAATAAACAAAAAGAACAAAAAATCTGCACAAACAAAGGACGTTTATTCATCAGAGGACGACGACGAAGACGTTCAATATGTAGACACGGACGACATGGATATGGATGAGGATTTGTTTGCTGTTGAGCCTTATCATTTTGCAGAATTGTTCCGTCTTCCTGTTTTAGATGATTATGTCTTAGTTGAATTCGAAACTAGAAGCCAATCCAAATTCTACGTTGGTCGAATCACCAAGATGAAAGATGATGAGGGAGAATACGAGGTCAAATTCCTACGATACCGAAAATGCAACACCTTCGTGGAGCCTCCTGTAGATGACATTGCCTCGGTTAATGGCACAGACATAAAGATGCTGTTGGAAAAAACCAGTTGA
- Protein Sequence
- MVRNRERKTSKGLFVEDDMKAAVEMVLGGCSVRRAAALKNVNHVTLSRYVKKTKERDFLCNYVTDRPPASTVDDQPPKTYGYTVPSESPNGSLPQLEEGAASNHAEISALDPGAGPSQTFLSPEDFRGYPKAGERKIDRKPGKKGKSMIATSTPEMRAIAEKKKPVPLSMKKAAKQKIKINKKNKKSAQTKDVYSSEDDDEDVQYVDTDDMDMDEDLFAVEPYHFAELFRLPVLDDYVLVEFETRSQSKFYVGRITKMKDDEGEYEVKFLRYRKCNTFVEPPVDDIASVNGTDIKMLLEKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -