Rneb025501.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- bab1
- Assembly
- GCA_948150685.1
- Location
- OX411307.1:99356726-99369651[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-14 2.6e-11 44.4 0.1 3 45 358 400 356 400 0.92
Sequence Information
- Coding Sequence
- ATGGCTACTCAAcaacagtattgtttgagatggaataaccatagatcaaatctgctcacagtatttgatcagttattgcagaatgaagcatttacagacgttactcttgcctgtgaaggtggtacctcagttaaatgccataaaatggttttagcagcttgctcctcttattttcagtgcttgttcactgagttaccatgtcgacatcctgttgttgtgttgaaagatgtaaggtacagtgaaatgaaagcgattttagagtacatgtacagaggagaggttaacgttgcccaggaccagcttgctgctttgttaaaagtagcagaagcattaaaagttaagggtcttgttgaggaaaATGGAAATTCGCAACAGAAAAGGACAGAAGAGGAGGGTAACGCTATCACTACATCGACAACAGCACTACCCCACGCTAGTAGTAGCGTAAATACTGAAGAATCACCTCCTCATTCCACTGGAATTTATCCAGCCGGATTTTCAAAATCGCCTTATTCCTATGGAAAGACAGGAGGAGAACGGAGTTCTAGCAGGATGTCTGGAAGTTCATGGCCTATGACTGGATTTTCTGTTTCGAATCAGTCGGTTCCATCAACTCATACAGGTGCAACATTAAACAGATGTTATGATGTGGTAACTGCAGATATGCCACCTTTAAGAAGAAAAAAATTATCAAGTCTTTTGATGAGTCGAGATACACCAATACTTCGAACTGTTCTAGGCCAAGGTCAAGCGGATTCTTCTCAGCCTGTGCCTTTGGTTTGCAGACCAGATAGCCACGAACAAGGAAATGTGTCGCCCTTTACAAATGGATCTGTAGCAGAAATTGAAAAGAACATTAAACCCGACCCTTCTCTTGGCGATGCTCCATCACCATACACTGACATTTCCACAGCAGAGGAAGACAACAGTGAACGGCAATCTCGAACTAACCTTCATTCTTCAGTACCTCATTCTATGTATGGAGAAACAAAAGGTGGAGTATCCTCAGCAATTGCCACTTATATTCCAACTCCTAAACCAGAATGGAAACGTTATAAACAGTATACCAGGAATGATATTATGTCAGCTATTGAAGCTGTCAGAAATGGAATGAGTGCACTTCAAGCAGCAAGGAAATTTGGTGTACCTTCTCGTACACTCTATGACAAAGTGAAGAAGCTGGGTATAACAACAAGCAGGCCTTTCCGACGAAGTTCAAGTAGCAATGGTAGTGCTGCTTTTCCTTATGGTTTAACAAGTACAGGGTCAATGGTTTATGGAGGAGTCGAAGATGAAACAAAATATTCTCAAAGCATAATGGAACACGGATTTCTCCAACATGCTTTAGAAGCCCACAATATAAAAAGAGAAGATATCGAACGAGAAGCAATGGTTGCCATGGTAGCTGCAACAAATACTGAAAACAATAGTAGAAGCTCTTCAAGCCCAAGAACGAGTGAACATCCCTTGAGTCCCAATTTAATCAAATATGCACATCGAAGATCTCCAACTCCTGAACAAACTGAAGAAGATTCAAATCAAGTGGAAGATCTTTCAATTACTCGAAAACCTGAAGCTGCTTCTGCTTCAAGAGTCATTATGCCTCCTATGAGTCAAGCAACAGCCATGGTAACAACTGGAAATGATCCTCAGGATAGTACTGACTGA
- Protein Sequence
- MATQQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLACEGGTSVKCHKMVLAACSSYFQCLFTELPCRHPVVVLKDVRYSEMKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENGNSQQKRTEEEGNAITTSTTALPHASSSVNTEESPPHSTGIYPAGFSKSPYSYGKTGGERSSSRMSGSSWPMTGFSVSNQSVPSTHTGATLNRCYDVVTADMPPLRRKKLSSLLMSRDTPILRTVLGQGQADSSQPVPLVCRPDSHEQGNVSPFTNGSVAEIEKNIKPDPSLGDAPSPYTDISTAEEDNSERQSRTNLHSSVPHSMYGETKGGVSSAIATYIPTPKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKFGVPSRTLYDKVKKLGITTSRPFRRSSSSNGSAAFPYGLTSTGSMVYGGVEDETKYSQSIMEHGFLQHALEAHNIKREDIEREAMVAMVAATNTENNSRSSSSPRTSEHPLSPNLIKYAHRRSPTPEQTEEDSNQVEDLSITRKPEAASASRVIMPPMSQATAMVTTGNDPQDSTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00763945;
- 90% Identity
- iTF_00763945;
- 80% Identity
- iTF_01298495;