Rneb013988.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- bab2_1
- Assembly
- GCA_948150685.1
- Location
- OX411306.1:132665039-132684721[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-18 4.1e-15 56.6 0.0 2 42 277 318 276 321 0.95
Sequence Information
- Coding Sequence
- ATGGCTGTACAACAGTTTTGTTTAAGATGGAATAATCATCAACCCAATTTCATTTCAGTATTTACGAATTTATTGACTAGTGAAACGTTAGTTGATGTTACTTTAGCTGCAGAAGGTAAACAGCTTCAAGCCCATAAAGTTGTTTTATCAGCCTGTAGCACTTATTTTCAGgctctgtttacttctaatccatgtcaacatcccattgttatccttaaagatataaaatataatgatcttaaaacaatggtggattttatgtactatggagaagtcaacgtttcacaggatcagttgcctgcaattttaaaGACAGCAGAAACATTAAAAGTAAAAGGGCTTGCTGAAATGCCTGAGCAGTTATCTTTGAGCAAGTCGGTTAGCCAGTCCTCTGAAAAAGCTGAATCACCATCCCCTATTTCGCCATCAGTTCTTAGGCGTAAAAGATTAAGAAAGTCATCAACTGGCTCTGGTTCAGAACAAACAAGTGAAGAAACTGCTGCTAGTGGCAGTGGTAGTACAGATATTATTCCTTCCTCTCCTGTTAAACATGAACCAGAAGAAGCTGTTTTGAGACATGAAGCAAGTACTGAATCAGAAACTAGGGAAGGTTCTCATAGTTTTGAAGATGACAATTTTCCATCTAGAAATGTCTCAGAAGAAACAACAGAGTCTAATATAAGGTGGAGTTCAACTGAAGAAAATCGCCCTGGACCTTCTCAGCCACCTCCCCAAGGATGGCCGTACACTACTGATGGACAGTTGGGTCTACCCTCAACAGATTGGCCTGTGTATCAAAGGAGAAAGCGGTCAACCAACCCTCAGCAGGATGAGAACTTCATTGCAGCGCTTGAAGCAGTGAGGACTGGTGGTCTTGGATTTTGCAAGGCTGCAAAAATTTATGGTGTAAACAATCGAACTCTTTGGTTAGAATATAAGAAAAGAGGGTACCCTATTACTAGACCAAGTAGTAGATCACGCACTTCTCTCGATCATGCTTGCTCTGTTCAAAAAATAAAATTACCCCCACTTCCTCCTCCTCAGCAACAAATTTCTCAAGATAATTCTCTCTCAACACCTTTTGATTATCCATTATATAATTTTAGTACTTTATGA
- Protein Sequence
- MAVQQFCLRWNNHQPNFISVFTNLLTSETLVDVTLAAEGKQLQAHKVVLSACSTYFQALFTSNPCQHPIVILKDIKYNDLKTMVDFMYYGEVNVSQDQLPAILKTAETLKVKGLAEMPEQLSLSKSVSQSSEKAESPSPISPSVLRRKRLRKSSTGSGSEQTSEETAASGSGSTDIIPSSPVKHEPEEAVLRHEASTESETREGSHSFEDDNFPSRNVSEETTESNIRWSSTEENRPGPSQPPPQGWPYTTDGQLGLPSTDWPVYQRRKRSTNPQQDENFIAALEAVRTGGLGFCKAAKIYGVNNRTLWLEYKKRGYPITRPSSRSRTSLDHACSVQKIKLPPLPPPQQQISQDNSLSTPFDYPLYNFSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00715203; iTF_00715019; iTF_01298490;
- 90% Identity
- iTF_01298490;
- 80% Identity
- iTF_01298490;