Rneb034511.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- Mblk-1
- Assembly
- GCA_948150685.1
- Location
- OX411311.1:113305847-113309838[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-17 7.2e-14 52.6 0.0 1 38 111 149 111 152 0.97 2 2 7.3e-19 1.8e-15 57.7 0.0 1 43 300 343 300 345 0.95
Sequence Information
- Coding Sequence
- ATGGGCAGAAGAACATGGATGAGCTACCAAGACGTGATGGTCGGGCAAGAGACTAAGAACAGCGAACCTCTCTGCGCCACACCGAGTCGGCAACCGCCTCTCATCGCCACGACTCGAGAAGGATCTCGGAGCCCAATGGCGGGCGGGTGGTACATGCGGCCCACTTCTCCGGAGCCCCAGCCGCTCGACCTCAGCGCCAAGCCCCCTAAGCCCCCGGTCAGCCCCAACAAGGCCATATTTAAAGGCAGATGTAGAGAGTGCTGTAGTAGTGTTTGTATTGACGACAGGGCGAAACCCCGGCCTACAGCTGTTGGGACCAGGAGGAGCTACACGGAGGACGAGCTCCAAGCGGCACTTAGGGACATCCAGAGCGGCAAACTGGGCACCCGGCGAGCTGCTGTCATATACGGAATCCCAAGATCGACCCTCAGGAACAAGGTCTACAAGATCTCGCAAGGCCCCCGCGATGTCGCAGGGATAGAGGAGAGAGTTGAAGATGAAGAAGACGATGACGACAGGGACTCTGGAGCAGAAGAAGAGCGGGAGACAGAGAAGGTGCTCATGCGGCCTCTGCTCAGCGTGGAGGACGTCATTCGGCTCACTTCGGAGGTGAGGTCCTGGCCCTGTCTCCAGCAACTCCTGGGAGGGGCCTCCACCTCCTCGGAGGAGCCTCTTCGAGTTCCGATCTACAAGACCGTCAAGAATGGCGAAGAGCCCGTACCTGTACCCAAGGACCAACCCCTCGACTTCAGGAGAGAAGTGAGGAATCACAACAACAACAACAGTATAAACAACAACAATCACCTCGAAGAGAAGAAGCACTCCCCTGGAGGAGGCAACAAGCAACAGTCCGGAGGGAAAGGTACACGGCCGAAGAGAGGCAAGTACCGGAACTACGACAGAGACAGCCTAGTGGAGGCGGTTCGGGCGGTGCAGCGCGGCGAGATGTCGGTGCATCGGGCGGGTTCCTACTATGGCGTGCCGCACTCCACCCTCGAGTACAAAGTCAAGGAGCGCCACCTCATGCGGCCCCGGAAGAGGGAGCCAAAGCCACAACCGGAAGAGAAGAGGAAGGAAGAGGAGAAGCGGGTGATTCCACCGCCTCCACCTCGGCCACCTCAGGTCACCCCGCCGCTCTCTAATGGCCTCAAGATGCAGCTCTTCGACCCGTCCATCGCCTACCGGGGACCGTTCCCGCCCTACTGGCAGCCACCGTTCCCTCCCATCCTCGAGTTCGGGCGGCCGGACTTGTTCGCCCAACAGCTTTCCACAACAGCGCCTCTCACCAAATCCACAAGGGAGATAGCAGAGAGCCTCCTGGAGGCGGAGAACGGGAGCTTCCTGGACGGGATCATCAGGTCGAGTCTGGACACCGGCCTTCCGGGGCAGCAGGAGTCCGGGAAGGTATTGATGGAGCAGCTGTGCAGACCCGAGAGCAGCAAACCCCCCTCAACCAGCTCCCCGCCCGCCAACAGGACACCATCCCCCAAGAACTGCTGA
- Protein Sequence
- MGRRTWMSYQDVMVGQETKNSEPLCATPSRQPPLIATTREGSRSPMAGGWYMRPTSPEPQPLDLSAKPPKPPVSPNKAIFKGRCRECCSSVCIDDRAKPRPTAVGTRRSYTEDELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKISQGPRDVAGIEERVEDEEDDDDRDSGAEEERETEKVLMRPLLSVEDVIRLTSEVRSWPCLQQLLGGASTSSEEPLRVPIYKTVKNGEEPVPVPKDQPLDFRREVRNHNNNNSINNNNHLEEKKHSPGGGNKQQSGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPEEKRKEEEKRVIPPPPPRPPQVTPPLSNGLKMQLFDPSIAYRGPFPPYWQPPFPPILEFGRPDLFAQQLSTTAPLTKSTREIAESLLEAENGSFLDGIIRSSLDTGLPGQQESGKVLMEQLCRPESSKPPSTSSPPANRTPSPKNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00715015; iTF_00763785;
- 90% Identity
- iTF_00715015; iTF_00763785;
- 80% Identity
- -