Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.1e-15 5.2e-12 46.6 0.1 2 41 57 97 56 100 0.90

2 4 3.3e-13 8.4e-10 39.6 0.1 1 39 110 148 110 151 0.95

3 4 1.9e-16 4.7e-13 50.0 0.0 2 45 166 210 165 210 0.98

4 4 3.1e-17 7.8e-14 52.5 0.0 2 42 218 259 217 260 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.1e-15	5.2e-12	46.6	0.1	2	41	57	97	56	100	0.90
2	4	3.3e-13	8.4e-10	39.6	0.1	1	39	110	148	110	151	0.95
3	4	1.9e-16	4.7e-13	50.0	0.0	2	45	166	210	165	210	0.98
4	4	3.1e-17	7.8e-14	52.5	0.0	2	42	218	259	217	260	0.96

Coding Sequence: ATGCGAGTTGATGGTGATGGAAAACATGTCACATTGGCAGTCCTGTTCCTCAACATAGGTAGTTCTATTCCTCAACATTGGTCTCAACAAGTTCAAGGGAGTGATGCTGGCAGTATTACAAAAGGCTCTACAAATAACATTATAGGCAGTGGAGGTAAATCTTGGAGGCAAGAAGACATGGAAGCTGCTCTTGAAGCCCTGAGGTCAGGCTCTATGTCATTAAGTAGAGCTTCTGCTATATATAGTATACCGTCAACTACCTTATGGCAGAGGGCTCACAGGCAAGGAATTGAAACTCCCAAAAAGGACGGTCCTTTGAAAACATGGACCGAAGATAACCTAAATGTAGCCCTTGATGCTCTCAGAACTGGTTCAATTTCAGCCAACAAAGCTAGTAAGGCTTATGGAATTCCAAGTAGTACTCTGTACAAAATAGCCCGCAGAGAAGGGATTCGGTTAGCTGCCCCTTTCAATGCTGCACCAACGTCTTGGGCTCCTGAAGATCTTGAACGTGCTTTAGAGTCTATCAGAACTGGGCAGTCAACGGTGCAGAGAGCAGCTGCTGAGTATGGTATTCCATCTGGTACCTTATATGGTAGGTGTAAAAGAGAAGGCATTGAGCTCTCAAGGGCTAACCCCACCCCTTGGTCAGAAGCTGCAATGAACCAGGCATTGGATGCTGTTAGAATCGGGCAGATGAGTATAAACCAGGCAGCAATTCACTTCAATCTACCTTATTCCTCGTTATATGGAAGGTTCAAGCGAGGTAAGTATGATGGTCCTGGAGGAGTTGAAGAGACCAATGGGCCAATTGAAGCTACAGGTGCAGAAGCAACACCTGCTGGACCTGACCTTTTGCCAACAACACAAAGCCAGCCACAAATTATGCTCGTTCAATACCAGCAGCCAATCCACATGTATCAACCAACCTGA
Protein Sequence: MRVDGDGKHVTLAVLFLNIGSSIPQHWSQQVQGSDAGSITKGSTNNIIGSGGKSWRQEDMEAALEALRSGSMSLSRASAIYSIPSTTLWQRAHRQGIETPKKDGPLKTWTEDNLNVALDALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWAPEDLERALESIRTGQSTVQRAAAEYGIPSGTLYGRCKREGIELSRANPTPWSEAAMNQALDAVRIGQMSINQAAIHFNLPYSSLYGRFKRGKYDGPGGVEETNGPIEATGAEATPAGPDLLPTTQSQPQIMLVQYQQPIHMYQPT

Sequence clustering based on sequence similarity using MMseqs2