Basic Information

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.013 2.1e+02 3.4 0.0 5 32 123 150 119 153 0.86

2 7 0.012 1.8e+02 3.6 0.0 5 31 141 167 130 171 0.65

3 7 0.014 2.3e+02 3.3 0.0 5 32 150 177 147 180 0.85

4 7 0.0092 1.5e+02 3.9 0.0 5 32 177 204 173 209 0.83

5 7 0.0087 1.4e+02 3.9 0.0 7 32 215 240 209 252 0.71

6 7 0.012 2e+02 3.5 0.0 5 32 231 258 227 261 0.82

7 7 0.00053 8.4 7.8 0.0 5 35 258 288 254 295 0.89

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.013	2.1e+02	3.4	5	32	123	150	119	153	0.86
2	7	0.012	1.8e+02	3.6	5	31	141	167	130	171	0.65
3	7	0.014	2.3e+02	3.3	5	32	150	177	147	180	0.85
4	7	0.0092	1.5e+02	3.9	5	32	177	204	173	209	0.83
5	7	0.0087	1.4e+02	3.9	7	32	215	240	209	252	0.71
6	7	0.012	2e+02	3.5	5	32	231	258	227	261	0.82
7	7	0.00053	8.4	7.8	5	35	258	288	254	295	0.89

Coding Sequence: ATGGTTGGAACCGTAGGAGAAGAAGTCCAGGTGAGAAGAGGAGATTTTTTCAAATTTTTTCTAGTGATTCTGGATGATCATATGAGGCCGGAGGAGTTCGGTTATTCTCGAATCGGGAGCATCCTAAGGCAGATTAGGGAGATCGAGGTGGGGGGCCCGAGGAAAAACGAGGACGAACGAGCGTCACCGAGGTCAATGATCGGGGCCCGGCCGCTCTGCTCCGAGGATCAGAGGTTCTCTAAGTGGATGCCGCGGGACCTAAGGCAAAAAGAGCTACTACAGTTTAAAAAAAAAAAACTTGTTTCTGATAAGATACTCAGTAAATGTTTTGTTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGTTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGCTGATAAGATACCCAGCAAACTTGTTGCTGATAAGATACCCAGTAAACTTGTTGCTAATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGCTAATAAGATACCCAGTAAATGTTTTGTTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGTTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGCTGATAAGATACCCAGTAAACTTGTTGCTGATAAGATACCCAGTAAACTTATTGCTAATAAGATACCCAGTAAACTTATTGCTGATAAGATACCCAGTAAACTTATTGCTGATAAGATACCCAGTAAACTTATTGCTGATAAGATACTCAGTAAATATTCTTCTGACGAAGCTTTGGGTTTGATTATAAATTTAAAACTTTATAGTTGA
Protein Sequence: MVGTVGEEVQVRRGDFFKFFLVILDDHMRPEEFGYSRIGSILRQIREIEVGGPRKNEDERASPRSMIGARPLCSEDQRFSKWMPRDLRQKELLQFKKKKLVSDKILSKCFVDKIPSKLVADKIPSKLIVDKIPSKLVADKIPSKLIADKIPSKLVADKIPSKLVANKIPSKLVADKIPSKLVADKIPSKLIANKIPSKCFVDKIPSKLVADKIPSKLIVDKIPSKLVADKIPSKLIADKIPSKLVADKIPSKLIANKIPSKLIADKIPSKLIADKIPSKLIADKILSKYSSDEALGLIINLKLYS

Sequence clustering based on sequence similarity using MMseqs2