Rlae031240.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- znf711
- Assembly
- GCA_963920725.1
- Location
- OY987258.1:57064068-57066842[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.027 3.1 9.5 0.7 3 23 325 347 323 347 0.91 2 10 0.8 93 4.8 1.5 3 21 499 517 497 521 0.92 3 10 0.0055 0.64 11.6 0.9 2 19 543 560 542 563 0.93 4 10 0.014 1.7 10.3 0.9 1 23 581 604 581 604 0.94 5 10 0.22 25 6.6 0.4 1 23 609 633 609 633 0.91 6 10 0.022 2.6 9.7 0.3 2 23 649 671 648 671 0.96 7 10 0.00032 0.037 15.5 0.3 2 21 677 696 676 697 0.93 8 10 0.082 9.5 7.9 5.3 2 23 793 813 792 813 0.95 9 10 1.9e-05 0.0022 19.4 5.8 1 23 819 842 819 842 0.97 10 10 0.16 19 7.0 1.4 1 12 870 881 870 882 0.89
Sequence Information
- Coding Sequence
- ATGCTTGAAGAAGATATAGATGATActcatttatgtattaaatgCAGTTCAACTATTGTTGGTTTAGAGAATTATGTACAGCATCGTAAAAGAAATTGTTGttctggtggtggtggtaaatCAGTATCTAATCGAGCAATTGTACAAGTACAAGTTGATCATCCATACGGAACATTTGATTTTACTGAAACCCAATCATCATTTTCGAAAACATCTGAAGATGTTGAAAAAGTCACTAAATCATTATCCGATACATATGATTTGCCATATGATTTAGGTGCTGATGTATTTTTTCAATCATTAGAATTACAAAGTAGTTCAAAACAACGTATCGTCCAACCGACAACAGCAATAACAACAACAGTATCAGCAAGTATTGGAACATCATCGGTTACATGTGGACCAGGTGTTAGTGTAAATGTTAGTGATAGTATTCATGGATCTGGTGGTAAAGTTTCAACGAGTAGTAAAATTTTAACACGTAAAGCAACTGCAGCTTTATTGCATCATCAAGTTGTTGAAAACGATGATGCATGGATTGATTCAACAAATAATTccgaaaatttaatgaaagcaGTACGGGATTTAAGTAGACATAATAAATgtgattcattatttaaattgaattttcaacaTGATTCACCAGACCAATCAGATGaagatgttgatgatgatgatgaagattaTGAACCGACTGTACCAGTTAATCATACTGGTGGTAAATGGAAACCAGAAAATCCATTACGTCCAATATTATTACGTAATTCACCAGCTTGGGATGATCGACATCAATGGGAAATGACAGATCCAAATGTTGAAGATAAAACGATAAAAGATGTTGATGATTTTGAGCATGATTTAAATCCACCGCCAAGTCATACGAAAGGAAAATGGGTGCCCGGTTCTAAAGTCATTAAATTGGACTATAAAGAAGATGTGGaaattgagaaaatttataGTCATCAATATTGGTGTAATACATGTAATCGTAAATTGGCATCGAAAGCTTTATACGAACGTcacttaaaatcaaatttacatttGAAAAGAGCAAAACCAGAACAAGAATTAGAACAAGCCGAGGTAAAAACATTATCAGAACGAATGAAGAAACCATCAATCTATTTAAACAGTTCAATTTATTCGACCGAATTACTTGAAGAATCAAAATCTCCAGCTCCAGAAAACTTATCAaccatcaataaaaaaaaacgcaaaCGTCATaagtattttacaaaatgtgAAACATGTAAGACACGTTTACCAAAATATCGTTTAGGTAAACATTTAATATCACATTATCATTATCGTCGTATGATTTTAAACCCGTCCAAATCCTTTGAAATGGTCCTCAAAAATATGCATCGCATTATCCATCAGGCACCGTTTCAATGTCAACCTTGTCGATTTTATACAAAtactgaaaatgattttatgtttcATTGGAATTCAAATGCTCATCGTGATTTGACCGAAGGTCCTGGTAGATTTTGGTGCCGATATTGTAAATTCGAATGTGAAGATAATAATCAAATGAGACGTCATTTATTGGGTATAGAACATAAAGAAGTTATTTTGGCAATAAATCGTTCAGTGCCAATTATGATTGGTAAGAAAGTTACAATTGAATGTAccaaatgtaaacaaaatttccGATATAATATGGAATTACGTAAACATGCTGAACATTGTTCATCAAATGAACCATTAGGTACTGCATCAAATATATATCAATCGAAATTTGAATGTATTAATTGTGAAGAGATTGTCAAATCGAAACGATCACTACAAAAACATTTGAAAACTAAacataaagaattaaaatatttttgttctgtATGCAGAATTGATTTTGAAACTGCATTGGAAGTGAAGAAACATCGTAGTACATcagaacataaaattaatgtaatggCTGTTAAAAATCGAAAAAGTATTTTGAAGAAATGCCGAAGTTGTGGTGAAATTCTGTCTGATTTGAATGCCTTAAAAAACcatatagaaaaaaatcatCCAGAAGAGAAATGCACGTGTCCGTACTGtggaaaatcttttattatttctcAAGAACTGGGACGTCATGTACGAGATAAAATTTGTCAAGCGTCTACATCTAAATCTGTTATGAAAactaatgaaaatgtaatatcTTCATCTGCTTCTATTGATTTTATCGAACAAAAATCATCTATATCAGCCAAAACAGAAATTATCATTAAAGatgaacattttaattttgaaccAGTTCTAATTCCAACTGAAGGCAAACAACTCGAATGTGAACAGTGTTCGTTTAGTACTGTCTTAGCAGCAGAACTACTATTTCATAGAATTCTTCATACAGTTCCATCCACATCTTCAAATCAAACTAAATTAACATGTCcaatttgttcaaaaatattCCGAAAACATTCACTACGATGCCATCTACGTCAACATACCAATGAAAAAATCTTTGAATGTCAACATTGTAAAATGCGTTTTGCCCGTAAACATAATCTGAAGACACACATTCGTAACATTCATAATCCGAAAGTACCAGACGACAAAccatctaataaaaaattagagtGTGATGTTAATGAAATAGCTAAATTCAATCCAAATTTTCAATGTGATACATGTggaaaaatttttaacaaaaagtaa
- Protein Sequence
- MLEEDIDDTHLCIKCSSTIVGLENYVQHRKRNCCSGGGGKSVSNRAIVQVQVDHPYGTFDFTETQSSFSKTSEDVEKVTKSLSDTYDLPYDLGADVFFQSLELQSSSKQRIVQPTTAITTTVSASIGTSSVTCGPGVSVNVSDSIHGSGGKVSTSSKILTRKATAALLHHQVVENDDAWIDSTNNSENLMKAVRDLSRHNKCDSLFKLNFQHDSPDQSDEDVDDDDEDYEPTVPVNHTGGKWKPENPLRPILLRNSPAWDDRHQWEMTDPNVEDKTIKDVDDFEHDLNPPPSHTKGKWVPGSKVIKLDYKEDVEIEKIYSHQYWCNTCNRKLASKALYERHLKSNLHLKRAKPEQELEQAEVKTLSERMKKPSIYLNSSIYSTELLEESKSPAPENLSTINKKKRKRHKYFTKCETCKTRLPKYRLGKHLISHYHYRRMILNPSKSFEMVLKNMHRIIHQAPFQCQPCRFYTNTENDFMFHWNSNAHRDLTEGPGRFWCRYCKFECEDNNQMRRHLLGIEHKEVILAINRSVPIMIGKKVTIECTKCKQNFRYNMELRKHAEHCSSNEPLGTASNIYQSKFECINCEEIVKSKRSLQKHLKTKHKELKYFCSVCRIDFETALEVKKHRSTSEHKINVMAVKNRKSILKKCRSCGEILSDLNALKNHIEKNHPEEKCTCPYCGKSFIISQELGRHVRDKICQASTSKSVMKTNENVISSSASIDFIEQKSSISAKTEIIIKDEHFNFEPVLIPTEGKQLECEQCSFSTVLAAELLFHRILHTVPSTSSNQTKLTCPICSKIFRKHSLRCHLRQHTNEKIFECQHCKMRFARKHNLKTHIRNIHNPKVPDDKPSNKKLECDVNEIAKFNPNFQCDTCGKIFNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00643714;
- 90% Identity
- -
- 80% Identity
- -