Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987259.1:40445487-40449658[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.62 72 5.2 3.5 2 19 361 378 360 381 0.93

2 18 0.5 58 5.5 4.9 2 23 392 413 391 417 0.90

3 18 0.86 1e+02 4.7 0.1 3 21 422 440 421 441 0.94

4 18 0.037 4.3 9.0 1.4 2 23 450 471 449 472 0.93

5 18 0.11 13 7.5 0.5 1 23 477 500 477 500 0.92

6 18 0.056 6.4 8.5 5.1 1 23 506 528 506 528 0.97

7 18 0.38 44 5.9 0.8 1 23 537 560 537 560 0.93

8 18 0.0022 0.26 12.9 4.7 1 23 580 603 580 603 0.97

9 18 0.18 21 6.9 2.5 1 23 608 630 608 630 0.98

10 18 0.1 12 7.6 0.1 1 23 646 671 646 671 0.96

11 18 0.0007 0.081 14.5 1.8 1 23 679 702 679 702 0.95

12 18 0.0084 0.98 11.0 0.0 1 23 708 731 708 731 0.95

13 18 0.0015 0.18 13.4 1.8 3 23 738 759 736 759 0.94

14 18 0.00025 0.029 15.9 0.6 2 23 763 785 762 785 0.96

15 18 2.7 3.2e+02 3.1 3.1 1 23 791 814 791 814 0.88

16 18 0.013 1.5 10.4 0.3 1 23 820 842 820 842 0.98

17 18 3.3e-06 0.00039 21.8 4.3 1 23 848 870 848 870 0.98

18 18 0.0077 0.89 11.2 0.2 1 23 876 901 876 901 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.62	72	5.2	3.5	2	19	361	378	360	381	0.93
2	18	0.5	58	5.5	4.9	2	23	392	413	391	417	0.90
3	18	0.86	1e+02	4.7	0.1	3	21	422	440	421	441	0.94
4	18	0.037	4.3	9.0	1.4	2	23	450	471	449	472	0.93
5	18	0.11	13	7.5	0.5	1	23	477	500	477	500	0.92
6	18	0.056	6.4	8.5	5.1	1	23	506	528	506	528	0.97
7	18	0.38	44	5.9	0.8	1	23	537	560	537	560	0.93
8	18	0.0022	0.26	12.9	4.7	1	23	580	603	580	603	0.97
9	18	0.18	21	6.9	2.5	1	23	608	630	608	630	0.98
10	18	0.1	12	7.6	0.1	1	23	646	671	646	671	0.96
11	18	0.0007	0.081	14.5	1.8	1	23	679	702	679	702	0.95
12	18	0.0084	0.98	11.0	0.0	1	23	708	731	708	731	0.95
13	18	0.0015	0.18	13.4	1.8	3	23	738	759	736	759	0.94
14	18	0.00025	0.029	15.9	0.6	2	23	763	785	762	785	0.96
15	18	2.7	3.2e+02	3.1	3.1	1	23	791	814	791	814	0.88
16	18	0.013	1.5	10.4	0.3	1	23	820	842	820	842	0.98
17	18	3.3e-06	0.00039	21.8	4.3	1	23	848	870	848	870	0.98
18	18	0.0077	0.89	11.2	0.2	1	23	876	901	876	901	0.97

Sequence Information

Coding Sequence: atgataacaataataaatataaataatgaatgttTACGTTGTGTAAAAACTATAACAGATAATGatgattatcaattaatttttgatgaaacTGGTCAGgagatgaatataaaaaaattattaaaagattgtttttatattgATGTCGATGAAGAGACGGAAAAATTTCAAGCACTTTGTGAAGAttgtttaaatgaattaattgaaactTTTGATATAATTGAATTAGAACGTGATATAAATGATTCtgaatctttattaaaaaatgttaaaactacTAATAATCAATCAGAAATACTAACATCATTATCGtgcaataataatgatttaaatagttataataatataaagttacaAGAAGAAGATGATAATgcgaaaaataataatgatgatgatgactatGTATATGATGaaagttattatataataaaaacagaagAAGAATTACAActtaatttagataataattcaaaagaaatattatcagaattacaagaaattaaaaataatgattatattattgaagatatgaatgatgaagaaattacagaaaatgatattttaggtGAATATACAAttgatgataatgaaaataatatagagGAATTTGTTGATGAACCGCAAGAAGAACTAATTTCTAATAATGAGAATGAAGTTGAATCAATTACTGAAGAAATacaattaaaagaagaaaaagaattattaataactgaTTATAGGGAAGAAAATTGTGATGATCcagttgaaatattaaataatcgtGGTGAAGAATATgaagaaattgattatttagaTGATGCTATTGatgatataacaaaattaaatgattacatgaagaaatcaatttatagtaattttaaagatatttcatTTCCCGATGAAATAAATTGTTGtttatgtaATGAAACTTTGGATAAACATTCAACAGCTTTGGATCATtgtacaaaaaaacataatgaaaatgattcaaattatttatgtgTTATTGATCAAAATTgtgatcaattttataatatagatgATTTATCAAATCATTTGGTGTTTAAACATTATGATTTAGATACgttgATTGTATATTCACAATGTTCATTTTGTACTAaacgatttaataatattataacatttaataaacattcatgctatgataataaaaatacatcaaGATGTACAACTGAATGTACTTTGTGTGGTAAACACTTCCGATCAAATAAAAgatatcgttttcatttacaatttcatttggAAAAACATCGACCAAAAGCATGTTTAATTTGTCGAAAATTTTATGAAGatgataatgaattatttgaacaTATTATGTATGAAAGGGAACCGAAGGAtgcattaatttgtaaaatatGTGATAGAAATTTCCTACAATTAGATacatatgaaaatcataaaaatgttcATCATTTAAAGCGACCATTTGCttgtaaattttgtgataaaacatatttaagtgGTCAACAATTACAAGATCATTtgaatgctCAACATTTACAAAAGAACATTTATAAGTGTAAATTTTgtggaaaagaattttttaaacgtaatattttacataaacatttattaaatcataaagaACCAGTTGAAGTATCAGTATTTTCATGTAGTAATTGTGGATTTGTTGGACAACATCATGAAGCtgttaaaaAACATATTGCCGAAgtgcataaaaataataataataataatttagttaatattttagcTAGTATCCAAACAATTGCATATTGTTGTGAATATTGTGAAATGGCATTTAATActtgtgaaaatttattattacatcgTAATACAAAACATGaagataatttatatgaatgtcagttatgtacattaaattttgattcatttaaaaaagcaaaaacacATCGTCAAACACATCAAAAAATGAATGATCTTAGGAGATTATTTCCAATTATACGACATTATGTTTGTAATATTGAAGGTTGTACAAGTAATTATGCCCAGTGGGTTGCATTAATGTCACACAAAAGAAATATTCATCTTATTGGTAaacaaaaaccatttaaatgtgAACAATGTGATGAAGGATGTGTTAATAggagACAATTAAATCAACATATTCaagataaacataaaaaaacaccaACATTTCCATGtccattttgtacaaaaatttatacaacaCCAATGGCAATTGCTGTTCATATAGCCAGAATGCATAATAACAaTAAATTGGCTTGTGATCATTGTGGTACactatgtaaaaataaagatgCTTTAGAGAAACATATAATTAATACACATGAAGTTTTAACATGTTATATTtgtgaaaaagttttaaaaaatatgaaaaatttaaaaactcatATTAAAATGGTACATAAAAAAGAGAAACGTTATTTTTGTCAATATTGTAAACGtggttattataataattgtgatcGATTGACTCACGAACAAGcgattcatttaaaaaataaagcttACACTTGTGATATTTGTCCATATACAACACCATATCGTGAATCAATTATGGTTCATACGAAAAATCACAATAATACTAAACCACATGAATGTAATATATGCCAAAAGAAATTTGCACGTAAATATTCATTAACATTACATCAGAGACGTCATGCTGAAGTtagaaaattTGTTTGTCCATATAATGATTGTAATAGTTCATATCCAAATCAGGGAATTTTAAATCTTCATATGAGAACTAAACATGCTGACGaaACAACActtttatcaaaatatgtacctgtaaaaaataaaaaattagctaaaatacttaaaaaaggAATTCCAGAAGATTATTTAGATgaagaagatgatgatgatattacaGATGAACttattgatgaaattaatagtaattCTGAAGATATTTATGTAGTTAATAGTGAAAAtggtgaaaatgaaaataatgaaaataatattaatgaagatAATGAATTAGAAGAGAATGATAGTAATATTGAATATGTTTTTgctgatttaaaaaataatgatgattgTATTGATGACGAACAACaatcaaatgaatataatattaatgatgaTATTGAAGATGTTGAAATtgaagatattattttaaatgaaaatgatgaacataattatatattaagagAAAATGGTGAAATTGAAacatatgaaattattgaaaattaa
Protein Sequence: MITIININNECLRCVKTITDNDDYQLIFDETGQEMNIKKLLKDCFYIDVDEETEKFQALCEDCLNELIETFDIIELERDINDSESLLKNVKTTNNQSEILTSLSCNNNDLNSYNNIKLQEEDDNAKNNNDDDDYVYDESYYIIKTEEELQLNLDNNSKEILSELQEIKNNDYIIEDMNDEEITENDILGEYTIDDNENNIEEFVDEPQEELISNNENEVESITEEIQLKEEKELLITDYREENCDDPVEILNNRGEEYEEIDYLDDAIDDITKLNDYMKKSIYSNFKDISFPDEINCCLCNETLDKHSTALDHCTKKHNENDSNYLCVIDQNCDQFYNIDDLSNHLVFKHYDLDTLIVYSQCSFCTKRFNNIITFNKHSCYDNKNTSRCTTECTLCGKHFRSNKRYRFHLQFHLEKHRPKACLICRKFYEDDNELFEHIMYEREPKDALICKICDRNFLQLDTYENHKNVHHLKRPFACKFCDKTYLSGQQLQDHLNAQHLQKNIYKCKFCGKEFFKRNILHKHLLNHKEPVEVSVFSCSNCGFVGQHHEAVKKHIAEVHKNNNNNNLVNILASIQTIAYCCEYCEMAFNTCENLLLHRNTKHEDNLYECQLCTLNFDSFKKAKTHRQTHQKMNDLRRLFPIIRHYVCNIEGCTSNYAQWVALMSHKRNIHLIGKQKPFKCEQCDEGCVNRRQLNQHIQDKHKKTPTFPCPFCTKIYTTPMAIAVHIARMHNNNKLACDHCGTLCKNKDALEKHIINTHEVLTCYICEKVLKNMKNLKTHIKMVHKKEKRYFCQYCKRGYYNNCDRLTHEQAIHLKNKAYTCDICPYTTPYRESIMVHTKNHNNTKPHECNICQKKFARKYSLTLHQRRHAEVRKFVCPYNDCNSSYPNQGILNLHMRTKHADETTLLSKYVPVKNKKLAKILKKGIPEDYLDEEDDDDITDELIDEINSNSEDIYVVNSENGENENNENNINEDNELEENDSNIEYVFADLKNNDDCIDDEQQSNEYNINDDIEDVEIEDIILNENDEHNYILRENGEIETYEIIEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -