Rlae033773.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- Hivep2
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:46930167-46954032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00067 0.077 14.5 2.1 1 23 295 317 295 317 0.97 2 8 0.0023 0.27 12.8 3.5 1 21 323 343 323 347 0.89 3 8 0.1 12 7.7 1.5 1 20 895 914 895 916 0.95 4 8 1.8e-05 0.0021 19.4 0.6 1 23 1753 1775 1753 1775 0.99 5 8 6e-06 0.0007 20.9 2.6 1 23 1781 1805 1781 1805 0.92 6 8 0.00044 0.052 15.1 2.0 3 23 2380 2400 2379 2400 0.97 7 8 0.0062 0.72 11.5 0.8 1 23 2406 2430 2406 2430 0.91 8 8 0.0081 0.94 11.1 1.7 1 23 2451 2475 2451 2475 0.93
Sequence Information
- Coding Sequence
- ATGGATCGACCAACTGTGCAGTACTTCACGTCCGAAGTATTGATACCAGATGCATataatcaaaaaaataaatcagtaacaataacaacattatcaaaaaataataattcttctgGTGGTGGAACAACAACAATCATGGatgaatcaaatattaaatcaacaaaattattaaaatcaacaactaccgaaaaattacaattacatttattaaataatattgatataaaaaatatgaccaatcataatcataataataatagtaaaaattataataatcaacaacaaaaaaataatacaacaacaacaacaacagcaacaacaacatcatcatcaacaataatAGATTCATTATATGGAACAACAACAGGACCACCATTATCATCCACCCAAACAACTGATAATTTAATCCACcgtagtagtaataataaccAACAAGATAGTAATAATTCAATTAGTTCAACATTATTAGagcctaaaaataataattcaaataatttaaataataatattgataagagtaataataataatagagaaattttaatatcaaaaattaattgtcaatcaacaaataataataataatcataataataatgataagtacctgcataaaaaatttaaaagaccTGCCAGTGTAAcagttatagaaaataataataataattatttaaatataaattcaccaattccaataacaacaacaaatttaacaaatgaacaaaatcaaaataatcaacATCATTTAACAATTGATTCAATTGGTGGTTGTAATGTCAGTGGTACTGTTAGTGatgataaaaaagataaagatcaacaacagcaacaacaaataaattcaacaacaacaacaacaccaacaccAACAATATTAGCTGGACGTCATGTTTGtccatattgtaatttaaattgtacgAAACCTTCGGTACTACAAAAACATATCCGTGCACATACAAATGAACGACCATATCCATGTGATAAATGCGGTATTGCATTTAAAacaaatagtaattattataaacattgcagatcAAGATCACACCTTCAACGAATGAAAGGTGTTGTAGATCCACAAccaaatgatgatgatggttcATTAGGTTCCGATCAGGATCCAGATTTAAGTAATAGCAGTTCAGATGtgatAAGTGGCACAACATCACCTCTTGACGAACGTATATCATCACCAGCAGTACAACAACTACATCATAATCAGCATTACCAACACCATCacaatcaacaaaatcaattatCTTCAGCTTCTtcaatttcatcaaattcatcaacatcatcatctaTACAAAAGAATTCAAATGATAAACCATATAAACCAAAATTTCATAATGCTGCGCTGtataaagatgaaaatataacaacaacatcaaTATATCGTCCCCGCCATAATCAACCCCAACCCCAActaccacaacaacaacagcaatctTCATTGTCGCCATATAGCAACAAGCAAAATCAAATGACAAATTTGTCGGCGACATCAAATCtccataatattaataatcacaTTTCTGAGACATTATCATCAAATTATTATTCAGCTCAATCACAATTtatacaacagcaacaacaacaagaacaacaacaaatacTTCATAACCATTCAACATATATACATCCTAGTGGAATAAATCATCATGAACAGCAACAAAAACATCATCGTAGTCAAATTTCAGTCAATTGTGAGTCAGCAATGGTGGTGGGGTCATCGACTATACcccatcatcaacaacaacactaTACACAACAAATATCATCATCAGCTTTTCAACAATCTGTGGCGCCTGTTTATAATCCTGAAACTACGGGTATAATAACAACTATTCCTTTAGTTGTTAGAGATTCAACAGGTTCTGGTAGTAATTTTGGTGGCGGCAGTAATAGTGGTGGCAGTCTGGCCACAGCTACAACTGGGGGTGGACATCAATTGaatgttGAATTTCTGCAAGAGCATATTTCCAAATTGATATCACAAAATCAGGCCATAGTAGAAAATAAGGAAGTCTTGCTACAAAAGAAATAtccaaaacaattaaataaacaaaaaagtttatcAAGTCTAGTCATACCAACATCTTCTTCCATTATTGAAACTGGTGGTAATTCGAGTTCGGTTACAACACCACTCAATTCTAAACTTCATTTAGCTTTGGCAAACAAACAACAgcaccaacaacaacagcaatcgcaccaacatcatcatcagcagcagTTACAACTTCTTTTCCAGCAACGTGAGGAAATGCTTAATCGTAATTCGCAAAATATGAATGGttttttaacaataacaaataataccATACCATCACCGGCACCGGCACCAAGACCTCACTGTAGCACTAGTAATAAAAATCTAACACATCAAATTTCGGAACCTTCAATATCATCACAACaaccattaaatttatcaaaagtatCTGTTGTTGTGGATCcaacagaaattataaatagtacACCATCACCGCCATTGGCACTTACTAGTGTAAAACAATCTTCTGGATGCCGAAAACGTTCAGCAGATGATATTCTTTTATCCTCGAATAGTAATACACCAACAAAAACTTTAGCTACACATCCACAAAATCCTGAACGttctataataaaacatttattattaaatgctcGTGGATTAGGTATACCAAATGGTGAAGGTGATGATGCTGTTTATACATGTCCTTTATGTAAATCAGATTTTCAAAATGCCGAAGAATTAAAACATCATACAAGTCATTATTGTCAAGGTGGACCATCAAGTGCACCAATTAGTCCAGTTGCATCAccatcttataaatatttccgttcaaattcaataaatgttaatttaccaGAATTTAATAATCCAACATCATTGGCAACATTGGCAAAATCATCTTTATTACATGGTAAAAATCCATTACCATTAGCTAAATTAGCATTTTATCGTTTAAAAACTAaacaaagtaatttaatattaaatcaattaaatgttaGTACTGgtaattcaacaaataatacTACAATAACAtctgcaaatattaaaaatgataataataatagtgaaacaatgcaaaaattaattgatgcGCCATTACCATCACCGGGACCATTATTAGGTAAAACACAACTTGTCGAATCATATAATCCAGCATCAAATTCCGATCATAAATCAGAAGATGTTATAATAACAAAAGTACATGAAGAAAGAAATTTTCCGAGTACatcaaataaagaattttataatgctaaaaaaattaaatatgataatcaGCATATTagtcataataattatacaccAGCACATGGTCAAACATTTTTTGGTGGTGGTAATATGTTCGAATCTCAATCAAcacaaaaaacacaatttttaatgtGTAACAGTGGCGGtgatatacaaattattgataaaaaagataataataatgttatgaaACGTTTTATGTCATCTGGTGGATGCATTGAACCAATTAGTGAGAGTATAACAAGTCCGAAATTTTTTCGTACACCATTATTATCTGGTGGTAGTTTTACAGAAATAATATCACAAGAAAATCAAcattcacaacaacaacaacagcataaAAAACATGAAACAAATCATCAATTgtcaatacaacaacaacatattaAACCGAAAATGATGATACCAATAACACCATTAACACCAAGTTTATCATCAACACCAAATATACATAGTGCCGGTAGAGGATTATCATTATCTGGAcaacattttcaatttccaccaataaattcaattaccGGTTTTAATCCATTAACATTACCACCAATTAATAGTATATCACATTCACCAGTTTTACCAAATGGTGAAAAATTAATACCATATGTACCAGGTATACCTGGACCAAATACATTGTCATTAcaattaccaccaccaccacaaaGATTAATTGATTTTACTTCAGGTAGTAAACGTAATTCTAGTCCAAATCGTATAAAAACTACTAGTCCAATGGTACAAGAATCAAAAACAAGTGATgaacaacaaaattatcattatagaaattcaattcaGAAGTATCAACAACAAACACCAATAATACgaatagaaaatatagaaattagttGTACGACATCATCATCGATTTTGCAAATGccacaaaatgatttaattattggtAATAGCAGTAATTTACGTTCAGTAGATGAATTATTACCTCAACAGCAAATGCAACGTAGTCCAAAAATTAGTTCTGTGTGGGTATCAAATACTCATGTTGAACCACAACAGCAGCAGCCATTACAtcgaaaatcttttaattttactcGAATGGCTGATAATATTAGTCCTAAAAAACcggaaaaagttaatttaattaaatcttcgATTCCTGTAAAAGAACAAGCAcgacattttaattttgagaatttaagtacaattaaaactgaaataaaaactgAAGATTTACAACCACTTCATGTTGATTGTCCATCATCTAACGTACCATTAACAACAgtgccatcatcatcatcattatcaaaaaGTTCACTTTTAGAACCTCTCCTACCATCACTACAACAGTCACCACAAAATCCAGATGACAAATTATTGTCGACACCGTCAGCTACAACTGCAAAACGAACAAAATTTTTGCGACCTACAAGTTTACCATTAAAACCAGGAACTTTTACACCGAAACGTCATCATGGTATAACACCTACAGCAAATACAATGCCATTAATATCACCAGAAACACCAAGACCATCTAAAACATGCGGACAAATGTTTTTAAATGGTCATGCCTACACGTATTTAGGTTTAAAATGTAGtacgaaaatgttttattgtacAGTTAATTGTCCACAGCCATCATATGTTGCTAATTTGCATAAATTATCTATGTATAGTGTTTGGCAAGTACAAGCTGAGAAAAATCTTCATCCACTTGGGTTAAAACCAAAAACTGTAATGGCATTGTATGATTCACGACAACGTAATTGTACTGGTTTTTCAAtggcaaatattaaattaccataTACATCTGTACATTCTCAGCATACTGTAATGACAccatttgaaaataatactggtcaattttatcatcatcaaatCAAATCAATTCCATTACCACAAATAACGACACCAACGTTGTCCGGTTCACATCAAGAACAAACTAATATTCCGAATGTTGTTTCATCGACAAATAATAGTGTAGTCAAAGATAATCAAAAAGGACCAATTTTAGTTGGTGGCTATGAAAGTAACGAagattatacatatattagGGGTCGGGGAAGAGGAAAGTATGTTTGTGCTGAATGTGGTATACGTTGTAAAAAACCATCAATGTTAGTTAAACATATACGAACACATTCAGATATTAGACCGTATACTTGTTCTACTTGTAATTTTAgtTTCAAAACAAAAGGCAATCTAACAAAACATATGCAATCAAAAGCTCATTATAAGAGATGTCTTGAATTGGGTGTTGATCCTGGTGAAGGATTAAATGGTGAATTTGTTGATAATGATCAACAATCTATAATATCTGGCAATGATAGAACATCTTCGATTCCTGGTGAATCAGATTCAGAATATGGAAGTGACGGTGATGATCGTGAAACCGAGAGTAGTGatacaGATGAATCAAAATCTCGTTTACCTGAACATGAAGCTGCTCATTGTTTACTATCATTATCAATGACGCCACCAAGTAATAGTGTTTCACCACATTATCGTTCATCGTCTCAAGTAAATTATGATAATGATAAACAACAGCatcaacaaacaataaattcaaataataccaGTCATCGTTTAGATGAGttaaaaaatcaacaacaaaatattaatgctCGTCGTGTTATCTCGTTTACATCACCAAAACCACCATTTGATTAtcagaaacaagaaaaatattattcaaatccaTTGGTTGTACCAAAAAATCGACCAATTGAGAAATTcgatgaaaatattatgaaaccAATAGATTTAACAAAACCACGGTGTTCAACACAACAACAATTACCAATTGTTCAACAATTATTAGAATCATCAAATACAACAAAACAATTGACAGTTGGAAATTTGaatgataataattcaaaaatcacAGATGTTATTGGTAATTTATCAAATGAATCTGTTTTTCATAAATCTTTACTTTCAATTACTGATAAAATACGAAttggtggtaataataatacagattcaattgaatttactggacaacaacatcatcatccacaaaaacaaaatgatgATATATTATTCCAAGCATATTTAACAGAACAAGCATTACAATATACGAAAATAAAACAAAGTCAAATGAGTAGTAGTAAAAGTTTTAATTCTGATGATATGATAAAAACGACAAATATTGGTTTAATtgttacaacaacaacagctaCAACTTCTATATTAgctggaaatttaaataattataataaaataatgaaaaaagataatataaatagtaaatcaccaaatttaacaacaattaCAGACACAACAATAACTACTCAATCATCAAATTCATCAATAGTTTCAACAACAAgttcaaatttaactaataaattactTAGTGgtgataaattagaaaataatgaaaatgactCAATACTTTTAACTGATCAAAGTTCAATTAAAGAAGTAGCTTTAGATATGCCTAGAATTACAGATAGTCCTATTAttcctattattaatgaaatattgacGGATTcaaattcgaaattaaataatatcaatacaaatacaaaagaTGTTAATGAatcgaatataaaattaacaaatgaaaattcacaattaattcGAACTTCATCGATATCTAAACAAAAAGATAATGCTAAAAGTGTTGCAtcggaatatttaaaaattacacagAAAACAAATACCAATTCCAATAATAATTCAGTTAAATTACAAAACGATGAAACTAATCCAGATGATGAAGATAGTTCTGATCAAGAAATACcattatcaacaacaacaattaataCCACAAatactacaacaacaacaacaacagataCTAGTAATTTGAAACCATCAAATGATTTTAGTGGTATACTAGCACGTACTGTAATTGTTGGTGAAGAtggttttaaaaattcaacaacaCCAAccgataatcaaaaattatttaatcgtGTACAAATATCAGATGATAATGGTCGACCAATATGTACAATTTGTTcgaaaacttttcaaaaacaaCATCAACTTGTTTTACATATGAATATCCATTATATGGAACGTAAATTTAAATGTGAACCATGTGCTGTTAGTTTTCGTACACAAGGACATTTACAAAAACATGAACGTTCCGAAgcacataaaaataaagttatgatGACATCAACATTTGGTGTACCAACAACATCAAATCCCCGTCCATATGAATGTGCTGATTGTAAAGTAGCATTTCGTATACACGGTCATTTAGCTAAACATTTACGTTCAAAAACCCATGTACAAAAATTAGAATGTTCACAAAAATTACCATTTGGTACATATGCTGAAATTGAAAGGGCTGGTATTAGTTTAACGGAAATTGATACAACCGATTGTGATAATTCGTTAgctagtttaaaaatattagcacaaaaattatttgaaaaagatcCAAGTAAATTATCAGCATATACAAAACCATCTGGTATGGAAATTAATTCGAatatattagataataattgtGAAAGTGGTAGTGAAGATAATCCAGATTGTTTAGATgatattcaacaacaacaaggaATATCAGTACCAATAACAAATTCatctacaaatttaataaatgatgataataatattactgaGAATCGAATTAATAATGTTGGAACAATTGGTGGtggaattaaaagaaaatttgattcatTTAGTAGTTGTAGTAATGATTCACAATCTGGTGCTATAACTGGTGATAATAGATTAAATATAACAACGACAATTACTACAAGTCAGGagggtaataataataataatagtagtattGTTGGTGGTGATGAAAAACGCTTGCGTTctacaaatttaacaaaatag
- Protein Sequence
- MDRPTVQYFTSEVLIPDAYNQKNKSVTITTLSKNNNSSGGGTTTIMDESNIKSTKLLKSTTTEKLQLHLLNNIDIKNMTNHNHNNNSKNYNNQQQKNNTTTTTTATTTSSSTIIDSLYGTTTGPPLSSTQTTDNLIHRSSNNNQQDSNNSISSTLLEPKNNNSNNLNNNIDKSNNNNREILISKINCQSTNNNNNHNNNDKYLHKKFKRPASVTVIENNNNNYLNINSPIPITTTNLTNEQNQNNQHHLTIDSIGGCNVSGTVSDDKKDKDQQQQQQINSTTTTTPTPTILAGRHVCPYCNLNCTKPSVLQKHIRAHTNERPYPCDKCGIAFKTNSNYYKHCRSRSHLQRMKGVVDPQPNDDDGSLGSDQDPDLSNSSSDVISGTTSPLDERISSPAVQQLHHNQHYQHHHNQQNQLSSASSISSNSSTSSSIQKNSNDKPYKPKFHNAALYKDENITTTSIYRPRHNQPQPQLPQQQQQSSLSPYSNKQNQMTNLSATSNLHNINNHISETLSSNYYSAQSQFIQQQQQQEQQQILHNHSTYIHPSGINHHEQQQKHHRSQISVNCESAMVVGSSTIPHHQQQHYTQQISSSAFQQSVAPVYNPETTGIITTIPLVVRDSTGSGSNFGGGSNSGGSLATATTGGGHQLNVEFLQEHISKLISQNQAIVENKEVLLQKKYPKQLNKQKSLSSLVIPTSSSIIETGGNSSSVTTPLNSKLHLALANKQQHQQQQQSHQHHHQQQLQLLFQQREEMLNRNSQNMNGFLTITNNTIPSPAPAPRPHCSTSNKNLTHQISEPSISSQQPLNLSKVSVVVDPTEIINSTPSPPLALTSVKQSSGCRKRSADDILLSSNSNTPTKTLATHPQNPERSIIKHLLLNARGLGIPNGEGDDAVYTCPLCKSDFQNAEELKHHTSHYCQGGPSSAPISPVASPSYKYFRSNSINVNLPEFNNPTSLATLAKSSLLHGKNPLPLAKLAFYRLKTKQSNLILNQLNVSTGNSTNNTTITSANIKNDNNNSETMQKLIDAPLPSPGPLLGKTQLVESYNPASNSDHKSEDVIITKVHEERNFPSTSNKEFYNAKKIKYDNQHISHNNYTPAHGQTFFGGGNMFESQSTQKTQFLMCNSGGDIQIIDKKDNNNVMKRFMSSGGCIEPISESITSPKFFRTPLLSGGSFTEIISQENQHSQQQQQHKKHETNHQLSIQQQHIKPKMMIPITPLTPSLSSTPNIHSAGRGLSLSGQHFQFPPINSITGFNPLTLPPINSISHSPVLPNGEKLIPYVPGIPGPNTLSLQLPPPPQRLIDFTSGSKRNSSPNRIKTTSPMVQESKTSDEQQNYHYRNSIQKYQQQTPIIRIENIEISCTTSSSILQMPQNDLIIGNSSNLRSVDELLPQQQMQRSPKISSVWVSNTHVEPQQQQPLHRKSFNFTRMADNISPKKPEKVNLIKSSIPVKEQARHFNFENLSTIKTEIKTEDLQPLHVDCPSSNVPLTTVPSSSSLSKSSLLEPLLPSLQQSPQNPDDKLLSTPSATTAKRTKFLRPTSLPLKPGTFTPKRHHGITPTANTMPLISPETPRPSKTCGQMFLNGHAYTYLGLKCSTKMFYCTVNCPQPSYVANLHKLSMYSVWQVQAEKNLHPLGLKPKTVMALYDSRQRNCTGFSMANIKLPYTSVHSQHTVMTPFENNTGQFYHHQIKSIPLPQITTPTLSGSHQEQTNIPNVVSSTNNSVVKDNQKGPILVGGYESNEDYTYIRGRGRGKYVCAECGIRCKKPSMLVKHIRTHSDIRPYTCSTCNFSFKTKGNLTKHMQSKAHYKRCLELGVDPGEGLNGEFVDNDQQSIISGNDRTSSIPGESDSEYGSDGDDRETESSDTDESKSRLPEHEAAHCLLSLSMTPPSNSVSPHYRSSSQVNYDNDKQQHQQTINSNNTSHRLDELKNQQQNINARRVISFTSPKPPFDYQKQEKYYSNPLVVPKNRPIEKFDENIMKPIDLTKPRCSTQQQLPIVQQLLESSNTTKQLTVGNLNDNNSKITDVIGNLSNESVFHKSLLSITDKIRIGGNNNTDSIEFTGQQHHHPQKQNDDILFQAYLTEQALQYTKIKQSQMSSSKSFNSDDMIKTTNIGLIVTTTTATTSILAGNLNNYNKIMKKDNINSKSPNLTTITDTTITTQSSNSSIVSTTSSNLTNKLLSGDKLENNENDSILLTDQSSIKEVALDMPRITDSPIIPIINEILTDSNSKLNNINTNTKDVNESNIKLTNENSQLIRTSSISKQKDNAKSVASEYLKITQKTNTNSNNNSVKLQNDETNPDDEDSSDQEIPLSTTTINTTNTTTTTTTDTSNLKPSNDFSGILARTVIVGEDGFKNSTTPTDNQKLFNRVQISDDNGRPICTICSKTFQKQHQLVLHMNIHYMERKFKCEPCAVSFRTQGHLQKHERSEAHKNKVMMTSTFGVPTTSNPRPYECADCKVAFRIHGHLAKHLRSKTHVQKLECSQKLPFGTYAEIERAGISLTEIDTTDCDNSLASLKILAQKLFEKDPSKLSAYTKPSGMEINSNILDNNCESGSEDNPDCLDDIQQQQGISVPITNSSTNLINDDNNITENRINNVGTIGGGIKRKFDSFSSCSNDSQSGAITGDNRLNITTTITTSQEGNNNNNSSIVGGDEKRLRSTNLTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -