Rlae021033.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- vanin-like
- Assembly
- GCA_963920725.1
- Location
- OY987256.1:21066970-21081898[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0045 0.52 11.9 5.2 1 23 716 738 716 738 0.98 2 9 0.21 24 6.7 0.2 2 19 762 779 761 782 0.90 3 9 0.00054 0.062 14.8 0.3 1 23 790 812 790 812 0.98 4 9 2.3e-05 0.0027 19.1 2.2 1 23 818 840 818 840 0.98 5 9 0.017 2 10.1 2.8 1 23 846 868 846 868 0.96 6 9 0.0052 0.6 11.7 6.2 1 23 874 896 874 896 0.99 7 9 0.0053 0.61 11.7 0.3 1 19 902 920 902 922 0.95 8 9 0.00015 0.018 16.5 0.1 1 23 930 952 930 952 0.97 9 9 0.00014 0.017 16.6 0.6 1 23 958 980 958 980 0.99
Sequence Information
- Coding Sequence
- ATGATCGGTTTAAAGacatCAACTCCAGAAACATCCACTTATACAGTTGGTGTAGTAGAATATGCTTATGAAACAAGTGGATCAAATGAAactattttaagaaataatttaaatggttatcgtgatttaataaaacaatatatagaAACACCAGAAGGCTATGAagttgatattattatatttccagaatcaacattaaataatttagaaacttTAACATTTGTTCCTGATCCGAAAAATAAAACCGTTTTATGTGATCCACATAATCCAAATCCAGAGTTTTTATCTAAACTGTCATGCTGGGCtggacaatttaaaaaatatatggtttttaatattattgaaaaagttaATTGTACGAAAGAGAGTCAActtgaaaataatgataaaagaCCATGTGCCAAAGATGGACTAACACGATATAATACAAATATCGTATTTGATAAAAACGGTGCTCTTATTTCGAGATAtagaaaatggaatttatttatagagAACATGAAGAATACTACTACAAATGTAGAGCTTATTTCATTTGAAACAGATTTTGGTGTTAAGTTTGGGACATTTATTtgctttgatattttattttggacACCAACACAGAAACTAATTCAGAATGGAATAAAAGATTTTGTATATCCAACAATGTGGTTTTCAGAGTTACCATTTATGAcagCCAATCAAGTTCAACAAGCATGGGCATTTGCTAATAATGTTACATTATTGGTATCGGGTGCAAATAATCCAACAGTAGGCAGTACTGGTTCTGGTATATTTGTTGGCCGAAAAGGTGCTATTGTATCGGAAATGTCAGGAAGaccaattaataaaatgtatataacaaGGGTACCAAAATACGattcaaaaattacacaaaaatctACTGATTTACCAACCTATTCAATACGTCCCGAAAGATTAATTGGTTTAAATGTTAGTCGGGATGAaacagttaataaatttaaaacagttttattaaattcaactaATCTCAATGTAGAAGAAACTGTTTGTTATGATAAATTCTGTTGTAATTTTAAAGTGGTACGAAAACCATTTAGTgaaaattcaattcattattGGTATCGATTAGTTGCATATGCTGGTGAACGAGATTATGCTGGCATTAGAAAAGGTTGGTTAAAAACTTGTGCAATAATTGCATGTACCGATGACAAAAGTTTAGATAGTTGTGGTAAAGTCTTCGATGATAATATTCAGTATTGGAATACACATTTTTTTGAATCAATTGAGATAAGTGGAgattttaaaaaacaagaagaattattaattatgccAAATAGTGTTGATGCAATGTTGAAACCAATACCAGCAAGTGGTTTTGAATTTAGTTCAGCTGATATTGGaaaaacaaCGAAAGCTGTTATGAAACTGAAAACACCAGTTTCGGACTTATTAACGTTTGGaatttatgcaaattattaCAATGGATTTAGTAGTGCATCAAGAAACATCTATACAGGAAAAAATGCAGCTGATGCTGGACATTATCTTGATAATTCTCAGGGTAAAAAAGGTTTTGGTTTCAGTAATCCAGGTCATCCAAGAGATCATGCTTCTGCACCAAATCCTCCAAATGTAGAGTCTTATTCAGCCAAACAACCAAAATCTGGTTTCGATTCacgaaatatacaaaatgaagtTGCTCATCTTGTTTTAATACATCCCAAAGTACAAGCAgcaatgaatatattaaatcaatatgataaaaagaaaagaaattcaATGATATATAAAAGACAAGATGTTAAGCTTTCAAAAACTGAtctcaatatttcaaataataaattaactggTGGTAGATgggaaaaaagtaaaaaaaaatctagttttcAAATCCGTGGTGCTGTTATTGTAATGCAACATTTTCCTGGAAAAGAAACAGATCCAAATGCGCCAGCTGAAATtgtagaaaatgttaaaatactaGAAGATTCAAATCATGCAAATTGTGATGaatcaaataaatcatattttcctaataataataattctaataaagaagaggaaaatcatataattaaaaataaatgttcagaTGGAAGTATAACTGACGATGAAATGTCAGATATTATTGGTTATAAAGCAAATTATAATACTAGTAACTGTAAAGATCAGACTTTTAAATGTAAGATGTGTACAAAAAAATTAGCTAGGAAATGTGATTATACAAGACATCTAAATTGGCATCAACGTGAgacaaataaaccaaaaaaaagtgGAAAACGTGGAcgaaaaccaattttaaatggCGATATTAGATGTAAACTTtgtaaaaaaggatttaaatttgaagttgATGCAATGCGACATGAAGAAAACTTTTGTCCTCGTCGTAAAAAATTTGTGTGTGAAGAATGTGGTAAAGGTTATGATAAACGGATAACATTTGAAGAACATAAAAGAATTCACACTGGTGAGCGGCCATTTCAATGTGATCTTTGTCCAAAAAGttttatagGTAGTAATTATTTAACACAGCATATGAAACATCATTTTAATGATAAACGCTATCAGTGTCAGTATTgtgataagaaattttttgaaagtacCAAACGTAAATTACATGAAATGATACATACAAACGATTTCCCATTTCAATGCGAATTTTGTGAAAAGAAATTTCGTtgcaaaagtaaattaaatgttCATCTTAAACGACATATTAATGATCGTATACATAAATGTGATTTATGCGATAAGAGAttctttgatattaatttattaagagCACACGCAGCTTGCCATAGTGCTGATAAACCATTTGCATGTGAGATATGTCCAGCACGATTCCCACGAAAAGGTGCTTTAAGATTACATCGTAAACTAcattctgaaataaaaaaatacgtaTGTAAACTATGTGGTAAAGATTTTGCCCAATATAATGGAATTTATTCTCATATGAAAACTCATGGAATAAAATATTCGTCAGAATATGAAAAAACTGGAATTTTTGAAACAGAAGagcaaaatgattaa
- Protein Sequence
- MIGLKTSTPETSTYTVGVVEYAYETSGSNETILRNNLNGYRDLIKQYIETPEGYEVDIIIFPESTLNNLETLTFVPDPKNKTVLCDPHNPNPEFLSKLSCWAGQFKKYMVFNIIEKVNCTKESQLENNDKRPCAKDGLTRYNTNIVFDKNGALISRYRKWNLFIENMKNTTTNVELISFETDFGVKFGTFICFDILFWTPTQKLIQNGIKDFVYPTMWFSELPFMTANQVQQAWAFANNVTLLVSGANNPTVGSTGSGIFVGRKGAIVSEMSGRPINKMYITRVPKYDSKITQKSTDLPTYSIRPERLIGLNVSRDETVNKFKTVLLNSTNLNVEETVCYDKFCCNFKVVRKPFSENSIHYWYRLVAYAGERDYAGIRKGWLKTCAIIACTDDKSLDSCGKVFDDNIQYWNTHFFESIEISGDFKKQEELLIMPNSVDAMLKPIPASGFEFSSADIGKTTKAVMKLKTPVSDLLTFGIYANYYNGFSSASRNIYTGKNAADAGHYLDNSQGKKGFGFSNPGHPRDHASAPNPPNVESYSAKQPKSGFDSRNIQNEVAHLVLIHPKVQAAMNILNQYDKKKRNSMIYKRQDVKLSKTDLNISNNKLTGGRWEKSKKKSSFQIRGAVIVMQHFPGKETDPNAPAEIVENVKILEDSNHANCDESNKSYFPNNNNSNKEEENHIIKNKCSDGSITDDEMSDIIGYKANYNTSNCKDQTFKCKMCTKKLARKCDYTRHLNWHQRETNKPKKSGKRGRKPILNGDIRCKLCKKGFKFEVDAMRHEENFCPRRKKFVCEECGKGYDKRITFEEHKRIHTGERPFQCDLCPKSFIGSNYLTQHMKHHFNDKRYQCQYCDKKFFESTKRKLHEMIHTNDFPFQCEFCEKKFRCKSKLNVHLKRHINDRIHKCDLCDKRFFDINLLRAHAACHSADKPFACEICPARFPRKGALRLHRKLHSEIKKYVCKLCGKDFAQYNGIYSHMKTHGIKYSSEYEKTGIFETEEQND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -