Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987257.1:47932267-47934138[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8.1 9.4e+02 1.7 6.2 1 23 163 185 163 185 0.95

2 10 2.4e-05 0.0027 19.1 1.2 1 23 193 215 193 215 0.98

3 10 0.13 15 7.3 0.2 2 23 247 268 246 268 0.91

4 10 0.00049 0.057 14.9 1.5 1 23 347 370 347 370 0.96

5 10 8.4 9.7e+02 1.6 0.8 14 23 382 391 379 392 0.84

6 10 1.5 1.7e+02 4.0 0.2 2 13 408 419 408 426 0.84

7 10 1.2e-05 0.0014 20.0 4.7 1 23 432 454 432 454 0.98

8 10 0.00035 0.041 15.4 5.6 3 23 470 490 468 490 0.95

9 10 1.4e-07 1.7e-05 26.0 1.8 1 23 496 518 496 518 0.99

10 10 9.4e-08 1.1e-05 26.6 1.8 1 23 546 568 546 568 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8.1	9.4e+02	1.7	6.2	1	23	163	185	163	185	0.95
2	10	2.4e-05	0.0027	19.1	1.2	1	23	193	215	193	215	0.98
3	10	0.13	15	7.3	0.2	2	23	247	268	246	268	0.91
4	10	0.00049	0.057	14.9	1.5	1	23	347	370	347	370	0.96
5	10	8.4	9.7e+02	1.6	0.8	14	23	382	391	379	392	0.84
6	10	1.5	1.7e+02	4.0	0.2	2	13	408	419	408	426	0.84
7	10	1.2e-05	0.0014	20.0	4.7	1	23	432	454	432	454	0.98
8	10	0.00035	0.041	15.4	5.6	3	23	470	490	468	490	0.95
9	10	1.4e-07	1.7e-05	26.0	1.8	1	23	496	518	496	518	0.99
10	10	9.4e-08	1.1e-05	26.6	1.8	1	23	546	568	546	568	0.99

Sequence Information

Coding Sequence: atggctctaaatttatcaaaaaataaaataaataaattaatttcattactaAATTCTTCGGATGAATCGTCGGATTTAGAAGATGCTGAAGCTGAAAAAATTAACGAAGTTATAAAAGTTGTAAGTCTTGAGCATAAACCAATTGAACTTGAAGACAGTTCTGGATCTGAATCTGAAATTGATGAAGATTATAAACCAATTAAATCTGAAGAAGATGCTTCAAGCAATGATGATAAAAATTCTATTGCTGAATATGATCCAAACGATCCTCTTAATATAAACaatgatgataaattaaatcTGAATTCATTATATTCTAAGCAGGAAGTAGTACCAACTGACAGTTCAACTACAGTAACACAAAATGATACGATGTCAAAAACTGGTaagagaaaatatattaaaaaatcgaTGTTAAATTTGGATTATCGTGATGATGAAGCATTACACGAAATAAAGAAAACGGCCCCTGCACGAGGAGGTAAATTTCATTGCAATTTTTGCAAATCCAGATGTCTTactcaaattcaattaaacagTCACttgaaaattcataaaagtaGTGATGCTGGTAAGTATTACTGTAGGACTTGCGATATATTATTTGCCACAAGCCGGAATTTAAGAAGACATATTCAGTCACATCAAGTGAAACCAAAACGATATTTACCAAATGAACAATTCGTAACTGAATTACAATATGAAACCAGTTGTATGCCGAACgaaacaaaaattttggaatGTAAAATATGCAATCTAACATTTcccaaaattttgattttgcgAAAACATTTACAGGGTCATACAAAAGCAGAATCtattgatattgaaattataaaaaagaatgatTATCTAACAAATCTTGTACCTGATGGGGCGACTAATTTGTGCAAAGTAATTGACTATATTGTTACTGAACTTCAAGCAGGACGAATGGAATCATTTTATACAGCAACAAATATGGTTGGAAATGAACTTAACTTAAGTGATTCTGAAACAGACACGGATGCTGAGGAAGAATTGcttcaagaaaatatatatgCTTGTGAATTGTGTGAAAAAAGATTTTCACGCCGTTATAAGATTTTGTATCATCAGAGAAATGATCATACAGCAGCTGAAATAAAGATTGAATGtgatatatACAATATGAAAAGGCATATTAAACTACATCATAAATCAaaagaattaattcaaaaatatgtaCCACCAAAAAAGGaagaatgtaaaatttgtaaaaagaaaGTCACACGTTTAGATAGACATCTTGCTGTAcatgaattagaaaaaaattttcaCTGTGACAAATGTCtcatgaaatttaaaagaaaatctaatttACGAGTTCATATGAAAATACATGATGAAAATTACAATGACCCATCCGAAGTAAATAAATCACATTTGTGTGGATTTTGTGGTAGAAAATTTCGAAAGAAATCACATTTGGTTTATCATACACGTGTTCATACTGGTGAAAAACCTTATAAATGTGAATTTTGTGATAGAGGATTTACAAGTTCATCAAATCTTACAGTGCATCGTAGATCACATACCGGTGAAAAACATATACCTTGCAAAAAGAAATTCACTCATTCATATAAACCAAAGAGTACAGGAAAACTTGAAAAGACTTTTCAGTGTGAAATTTGTTTAAGACCATTTAAAAGAAAAGATAATCTAAAATCACATATGAAAACTCATAGGGACAACAAAAATGAACCATCAGAAGAtaacaatttgtattttttgtggTAA
Protein Sequence: MALNLSKNKINKLISLLNSSDESSDLEDAEAEKINEVIKVVSLEHKPIELEDSSGSESEIDEDYKPIKSEEDASSNDDKNSIAEYDPNDPLNINNDDKLNLNSLYSKQEVVPTDSSTTVTQNDTMSKTGKRKYIKKSMLNLDYRDDEALHEIKKTAPARGGKFHCNFCKSRCLTQIQLNSHLKIHKSSDAGKYYCRTCDILFATSRNLRRHIQSHQVKPKRYLPNEQFVTELQYETSCMPNETKILECKICNLTFPKILILRKHLQGHTKAESIDIEIIKKNDYLTNLVPDGATNLCKVIDYIVTELQAGRMESFYTATNMVGNELNLSDSETDTDAEEELLQENIYACELCEKRFSRRYKILYHQRNDHTAAEIKIECDIYNMKRHIKLHHKSKELIQKYVPPKKEECKICKKKVTRLDRHLAVHELEKNFHCDKCLMKFKRKSNLRVHMKIHDENYNDPSEVNKSHLCGFCGRKFRKKSHLVYHTRVHTGEKPYKCEFCDRGFTSSSNLTVHRRSHTGEKHIPCKKKFTHSYKPKSTGKLEKTFQCEICLRPFKRKDNLKSHMKTHRDNKNEPSEDNNLYFLW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -