Rlae019128.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:133621016-133632686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.8 4.4e+02 2.7 0.1 1 11 94 104 94 116 0.84 2 14 0.32 37 6.1 1.9 2 23 273 294 272 294 0.91 3 14 0.11 13 7.5 0.2 1 23 300 323 300 323 0.91 4 14 0.096 11 7.7 1.2 1 23 376 399 376 399 0.92 5 14 0.0013 0.15 13.6 0.3 2 23 405 426 404 426 0.96 6 14 3.2e-05 0.0037 18.7 0.8 3 23 436 456 434 456 0.96 7 14 2.4e-06 0.00028 22.2 1.1 1 23 462 484 462 484 0.99 8 14 0.79 91 4.9 1.0 1 23 529 551 529 551 0.96 9 14 0.0013 0.15 13.6 0.7 1 23 781 803 781 803 0.99 10 14 0.00013 0.016 16.7 2.2 2 23 862 883 861 883 0.97 11 14 0.03 3.5 9.3 3.5 1 23 888 910 888 910 0.96 12 14 0.001 0.12 13.9 2.6 1 23 919 941 919 941 0.98 13 14 5.7e-05 0.0066 17.9 2.2 1 23 947 969 947 969 0.98 14 14 0.025 2.9 9.5 4.4 1 23 975 997 975 998 0.96
Sequence Information
- Coding Sequence
- atgccACCTCAATTAGCAATTTTACAAAGTGTTGAAACAAAGAACACTGAAATAAATCGAAATAAAAGTACAGAAGATTTAAGTTTAATTGCTGGTAAAATAGTTACAAATGCTTTACATATTCCACGAAGTCTTTTTTGTCCATTTTGTGCTGATgaATATATGTTTGAGTTTACACTTAAAGATCATTTGAAACGAAAGCACACCAAAGAGTTATCTAAACGTCATGAAAACGATTTGCCTGAAAGTGATCAAACATTAGatgatgaaaataatcaatatttatgtcCATATTGTAAtgcagttttttatatatttggatTAGTACCAAAACATGTTGCCAATCATCATGGTAGAAATTGGCTTCAACATTGGCAACAAACttatggtaaaaaattacataaaaataattcctCAGAATTGTCACCAGAAACAAAAGATCCAAGTATTATTTATGCTAAATGTTCACCAGGTTTAAGtgatatatttgataaattaattaccaAAGATTCTGATTCATTATTATCCAATTCAATGACTAATTCGCCacaattgaaatcaattttaaagaaaacaccAAaaaacataccaattaaaaatgaaattaaagaagaaaatataacaGAAGAAGACGAAGATGAAAATTGTACATTTCAAGATATTTTAGAAGCAGctacaaaatttgtatcaattaatttacaacCGACAAAAATTGAAgatgatattattgaaaatgaaaaaatcaaaatagatgaatataataaaaatataagtataggtcgagaaaatacaaaaagtatTAATCGTGatgaaatgaaatgtaattattgtaaaaaagtaTATTCATGTATATCAATATTACGTGAACATGTTCGAATACATAAAGGTGATCGTATATTCGTATGTGAAATATGTAATCGTGGTTTTTTACGTGTTGCTTATTTAGAAgaacattcaaaattatttcattcatcTGATAGTTCCTCACATATaccagaaaattttgataattataatattaaagattatgataaaaatgatttacaatgtataatatgtctaaaaatattagtaaaaccACCAGTATTATATGAACATTTAAAAATCCATTATGGTGTTAAaccatttaaatgtaaattttgtaatttacaatttatacgaAAACGTATATTATCAGCACATGAAAATCAAATACATgaaatggaattattaaaatgtgcTGAATGTAATAGAACATTTACAGAAATTGATGATTTAattgaacataaaaaacaacatttagATATTAATAAACCAACAATAATTTGTCCATATTGTGATAAACaatttgaaacaaaacaaaaattatcatatcaTCAAAGATTACATGAAAAtggtgaaaaatataaatgtgatATTTGTGATAAACGTTTTgctaatttttatagtttagaaCAACATGAAAATACCCATAAAACAattgaaaagaaatataaatgtaaattacataataatgataAACATTTATCATTACTGCAATCACaaccaaaatcaattattattgaaaagaaAACTAATTCTAATGTTATTGAAGAtgagaaaaattttatttgtacaatttgTAATCAAGATATGAAAACACGTTCCCGTTATGCATATCATGAACGTTTGCATAATGCTGGTGAtacatataaatatgaaaatcaacaattaaatgatattattaaagcTGAGGTTGAAGAAcaagaagaaataattaaaataaaagataatttattaaatgatttaaataatgataatattacagatatattaaataatgttgataatttagcaacaacaacaatagcAACAACTACAGAACCAATACAACAACAATTTGAATCTTGCGATTTAGATGATTTAGAAGAAATGCTTAGTTGTCACATTgttaaaaaaccaaatattattattggtttaaatcaaaaacaacaacaacaacaacgtcGAAAATCAATTATTCAAGCACATATTATATCACCACCATTAGTTCCTAATTTaaatccaaataataatttaatatcatcaaatattataacaaaccATCAGCaaccaattatattaaaatcattttcatcaaatccaacaacatcaacaacaacaacaataaatcatcctacaaaaatattacaatcaacaacatcatcaacaattattcaaacatcatcatcaacacaacaacaacagcaaaattTTTATCGTAATAAAACAactaattatatgaaaattacaacaacaacaacaactactacTACAACAGCACCACAACCAGAACCAACAGAAACAGCTTCATCAACAAAACCAATAACAAGAATAACACAATATAAATGTCaacaatgtaataaattatttacatcattaataatattaaaagcacATTTACGTATTCATTTACCAACACccgatgaaaaattattatcatgtaCATATGATAAATGTCCATTGGTATttcaagaaaatttaaatacaacagAAGTTACTACAAATGAAGTAGAAGAACTTCAACAACAATCAGATGAAATACAGCAAGATCAACAACTGGACCAACAACgacaaaaacatttacaatgtgacgaatgttttaaatatttccgaaataaagataaattacgTATTCATAAAAAAGTACATGTTATAAAtccatttaaatgtaatttatgtacaGTACATTTTAAAACTGAAGAAcgtttaattaaacataaaacattacaTGATGCACAGTTTAATGGTAAAGCATTTCCATGTAAATTATGTGGTCGGGTATTTGaaacacaattaaaattaaaatgtcatattAAAACACATTCAAATGATCGTCCATATCCATGTTCACAATGTACATTAACATTTAAAACTAAAGGACATTTGATTGAACATTCTAGAATGCATACTTCAGATAAACCATTTAAATGTACATTTTGTGATATGGAATTTGCTAGATCAAATTATCGATTACAACATGAAAGAAAACATCACAatcgtaaataa
- Protein Sequence
- MPPQLAILQSVETKNTEINRNKSTEDLSLIAGKIVTNALHIPRSLFCPFCADEYMFEFTLKDHLKRKHTKELSKRHENDLPESDQTLDDENNQYLCPYCNAVFYIFGLVPKHVANHHGRNWLQHWQQTYGKKLHKNNSSELSPETKDPSIIYAKCSPGLSDIFDKLITKDSDSLLSNSMTNSPQLKSILKKTPKNIPIKNEIKEENITEEDEDENCTFQDILEAATKFVSINLQPTKIEDDIIENEKIKIDEYNKNISIGRENTKSINRDEMKCNYCKKVYSCISILREHVRIHKGDRIFVCEICNRGFLRVAYLEEHSKLFHSSDSSSHIPENFDNYNIKDYDKNDLQCIICLKILVKPPVLYEHLKIHYGVKPFKCKFCNLQFIRKRILSAHENQIHEMELLKCAECNRTFTEIDDLIEHKKQHLDINKPTIICPYCDKQFETKQKLSYHQRLHENGEKYKCDICDKRFANFYSLEQHENTHKTIEKKYKCKLHNNDKHLSLLQSQPKSIIIEKKTNSNVIEDEKNFICTICNQDMKTRSRYAYHERLHNAGDTYKYENQQLNDIIKAEVEEQEEIIKIKDNLLNDLNNDNITDILNNVDNLATTTIATTTEPIQQQFESCDLDDLEEMLSCHIVKKPNIIIGLNQKQQQQQRRKSIIQAHIISPPLVPNLNPNNNLISSNIITNHQQPIILKSFSSNPTTSTTTTINHPTKILQSTTSSTIIQTSSSTQQQQQNFYRNKTTNYMKITTTTTTTTTTAPQPEPTETASSTKPITRITQYKCQQCNKLFTSLIILKAHLRIHLPTPDEKLLSCTYDKCPLVFQENLNTTEVTTNEVEELQQQSDEIQQDQQLDQQRQKHLQCDECFKYFRNKDKLRIHKKVHVINPFKCNLCTVHFKTEERLIKHKTLHDAQFNGKAFPCKLCGRVFETQLKLKCHIKTHSNDRPYPCSQCTLTFKTKGHLIEHSRMHTSDKPFKCTFCDMEFARSNYRLQHERKHHNRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -