Rlae024361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhamphomyia laevipes
Gene Symbol
Rreb1
Assembly
GCA_963920725.1
Location
OY987256.1:59899845-59906413[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.0048 0.55 11.8 0.6 1 21 264 284 264 286 0.96
2 13 0.00045 0.052 15.1 0.2 1 23 296 318 296 318 0.98
3 13 3.1e-05 0.0036 18.7 7.5 1 23 324 346 324 346 0.98
4 13 0.14 16 7.2 3.4 2 20 563 581 563 582 0.94
5 13 0.012 1.4 10.6 0.1 1 23 881 903 881 903 0.97
6 13 0.00023 0.026 16.0 0.9 1 23 913 935 913 935 0.99
7 13 0.0011 0.13 13.8 2.0 1 23 941 964 941 964 0.97
8 13 0.0013 0.15 13.6 2.1 1 23 1312 1335 1312 1335 0.95
9 13 0.00012 0.013 16.9 0.3 2 23 1635 1656 1634 1656 0.97
10 13 0.19 22 6.8 6.3 1 23 1662 1685 1662 1685 0.97
11 13 1.7 2e+02 3.8 4.2 1 23 1770 1793 1770 1793 0.93
12 13 0.011 1.3 10.7 0.5 3 23 1844 1864 1842 1864 0.96
13 13 0.0018 0.21 13.2 4.8 1 23 1870 1892 1870 1892 0.99

Sequence Information

Coding Sequence
ATgatcaaaacaaataataataatatcacatcAATAACAGCAACGACAAcaccaaatattaaattagaaatggaTCGTCGTATATCAACAACATCAGAATCATCAGTTGAACCAATGGATTTAGGTAGAACACCAAcaccaaaaaagaaatttcataccaaagatattaataatgatacaataattaataatacaatattaaataatataaaattaacaaataatattgattcCGAAGAAAATTCATATGATTCCGATGAacatgaaaatgaatatttacaacagcaacaacagcaacataaaaataatattacaacaaatataaaatttacaaataagaaattacatcgaaaaaataataataataataataatcatcatcgaGAAAAACGTATTATacaaattgaagaaaatgatAATCCACATTCATTACGTAAAAAATTTCGAATCAGTACACCaaatcgaaataataataatttaataaatcataaaaataataataataatttaatattaacaaaaattaataataataataataatgatgatgatgaacagcaacaacataaatttgataataatattacatcAATCAATAATGATCAACagattgtattaaaaaatgatataaataatgatgATTGTTGTATTGGTAGTGGTGATGATGAAGATCGTACAAATAATGAATCTGGTTTTGTTGATACAAGTggcaataatataaattcatcacCAACATCAACATCATCTAGTCCCGAATCTGGTATTGGTGAACGTGGTGATGATGTAAAATATGTTTGTCCAATATGTGAAATTGTATCAGCAACACCACATGAATTTACCAATCATATACGATGTCATAATTATTCATCTGGTGATTCAGAGAATTTTACATGTCGTATTTGCTCAAAGGTCCTTTCATCTGCATCATCTTTAGATCGTCATGTTTTAGTACATACAGGTGAACGTCCATTTAATTGTAAGTACTGTCATTTAACATTTACAACAAATGGTAATATGCATAGACATATGCGTACCCAtaaacaacatcaacaacagcaTCATCAACGTAACaacagcaataataataataacagctCAACAACAGTAACAACAAATGGCAATGATAGTAgtggcggtggtggtggtgtaattcaaaataaaactagtaataataatggaaaaccaattaaagataataaaattaataataataataaaatgaacattagtatcaacaataataataataataatatttctggtgGTAGTGGCAATAATAGTAGTAGTAATGGTGGTGAAAGTTATGAAAGTGATGGTTGCTCAACAGATTCAAGTATCTCAGCTGATCATGtctcaaataatattataataaatacaacaaaaaatggtaataataataataataataatattataaataataatttaaataaacgtaAAAGTACAgatgattttgataataatggtgaaaatattttaaatggtataATTAAACGTCGtattaaaacaacaattaataataatataattaatgaaaatgatattaatataaatacaataaataataataataataatgataataatatatcaaaattatgttgTCCAGTATGTAATcgttatgattttataaatatgttaacaTTAGGTACACATATGGATCGTGAACATTCTGATATACCAGCTAAATGTCGTGAATGTGATGTTGTATTTAAAACGCATAAACAATTAAATGGTCATCgttgttgtaataataataataataatgataatgataaattaaatataacacaTGGTTTTCGTGATTTAACATTTGTTGATTTTTCAAGTGAGAAATTTCCATTAATTGCTAAATCATTATGTGAACAAACATTACGTACATCAATAAgtaatcaaaaatttgaatgtCCAAAATGTTTTAGACAATTTCCATGTACCAGTGCAGTTGATATACATGTTAAAGAATGTTATTATAATGATGGTAATGATGAAATATTAACATCATCtacaatatcaacaacaaataaattaattgcatCATTACCAACAATATTGCCACATGATTTTTCGAtgcgtaaaaaaaatataacaacaaaacgTAAACAATCCGATGAAGATAGTGAAAGttcaattgatgatgatgataatgataataacaataatcataataatgatgatgttaATAATGTTAATCGTAATCGTGATGAATTTTTTACCCATttagatttacaaaataaaactacaaGTAGCATAATGTCATCACCATGTAGAGAGAAATCTGATTATAATAAATCTGAATTAGATAAAACACCGACAAAAATAACAACTACAACTGGAATTACATCAAATCATCATTTGAAcactactaataataataatactagttATCATAATCATCAATCACCATCATTTTCGTTGTTACAACAGCAACAAGTTTTACAACAGCAACAGAATGATTCAAAAGATTTAGCTGATATTCagtcaattttaaatgttacatcatcatcatcaaataatttcttgcgtaatttcgaaaataatgttaatacaCCGAGCAGTGAATGTGGTTATGGTAAGGACGAAGAAGAAGCACAAGATGCATTTACATCTGAATTTCGTAAAATGAAATTACGTGGTGAATTTCCATGTAAATTATGTACAGCTGTATTTCCAAATTTACGTGCTTTAAAAGGACATAATCGTATTCATATTAGTGCTGCTGGTGCAGCTGGACCATTTCGATGTAATATGTGTCCATATTCGATACATGATAAAGCGGCATTAGTAAGACATATGCGTTCACATAATGGTGATCGTCCATATGAATGTGCTGTTTGTAATTATGCATTTACAACAAAAGCAAATTGTGAACGACATTTAAGGAATCGGCATGCCAAAACAACACGTGAAGAAGTTAAACGTGCCATTATTTATCATCCATCAGAGGATTCAAGTTGTGATGATCCaactaaaaaattacatttattttcatcaccagaatttgataatgatgatgttgttgaaaTAAATCCAACGCCAAAGGATCGATCAACACCAGTTTCGCACCTCAAGGAAATGTTACAAAACGATAATAAACCAATGAAAATTCAAGTGAAAAGCTTAGAGAAACTTCTTGACAAAAGTTCAATATCTAGTTATGGTCATTATGACGATAGAGAAGAAAAGGAATTGGACAATGAATCACAAAGTGATACATCACATCCAATTGATTTGAGTATGGATGTTTTAGATCTGAGTAAGAAATCAACAAAAGttacagaaaataaattggaaaatgatAATGTACCAGAGCAGCCAAAAATCGATATGGATTTGTtgcaaaaaaatcatcaaattttaCTTGCTCAACAGCAATTCCTCAGTgagaatttaccaaaaattgatTCTGCtcagtattttcaattttcccaGCTTTGTAATAATTTAGTATTTCCACAATTACATCCAGCATTCTTCTTACAAAATACATTCCTTCCGAATAATCTtgccgattttaataaattcgcaCCTCTACTAACTACTGGCATATTTGGTAATCCACCAGCCTTCAATATACCTACAGCATTAAATGTGAATATTCCAAATCAACAATTACTACAGCCACAAGAGCCTCAGTCACcaactaaaatttttgaaaatccaattcaaaaattaacaaCACCCTCGCCAGTACAATTGTTGCCAAAATCATTGACACCATCTTCTAATCAACTTAATATTACACAACATTTGTCACCAACTGAACAATCGACACAagctcaacaacaacaacaacagcaacaatctCAAACTAAGCAAATGCCTCAAccaatacataataataataataataatggaccTGTAAAAATGGTAATTAAAAATGGTGTTCTAATGCCGAAACAAAAACAACGTCGCTATAGAACTGAACGCCCATTCGCTTGTGAACATTGCTCAGCTCGTTTTACACTTCGTTCTAACATGGAACGTCACATTAAACAACAACATCCACAACAGTGGGCACAACGCCAACGAACTGGACAACATGTTATTCGAGGACGGGGTAACAGTTCTAATGTAATATCACAGATTTCATCATCTCACTTAAGAAATTCATCAATTTCggtcaataataataacaataataatatgtcATCATCAAATCACTTTAGCGCAATTTCAGATCAAGTTAAATATGCAATTCTTGCTCAACAGTTAAAAGCACGTAAGGATACTGATATCCTTCAGCAAGCTCTTTCGCAGGGTTCAAATGTTAATGCTTTTAACAAcacattaaataataacaataataattgtactAATGTCGAAGACGATGatcctaaattaattattgatgaagATGATGAAGAAGACGAAgaagaagatgatgatgatgatgttgaagATGTTATTTGTGATGAACCAAAACCACAAGATCTCTCAAATACAACAGAAGTAACAGCTAATAAAATAGCTGCTAAAAAAGTAGCTGAAACTATATTAGAACAAGCTATAAAAGCtggaaataatttatcaaagaaATGTTTGAATAATGAAGATCGCAATGCTACTAAagattttgaattgaaaatagcCAATACGATGATAGCAAGAGCTGAATCGgttggtaaatatttaaaagaagtaGCTAGCTCACCATTTAAAGATGATCAACCAGATTTAGTATCAGTTTCGAAATTAGTTGACAATGCTACAATTccattatcatttaataattattttcggcCCAGTGATATTGCCAATCAAATGGAACAAAGTGACGAAGAAGGACTAGTTGCATCTGGCAGTGCATCTGATAATAATTCTGGTCCCGAAGAAACCTTAACTAATACCAATCCAGATCAAAAGAAAAAATCAGCTTATAGTTTAGCACCAAATCGTGTATCATGTCCTTATTGTCAACGTATGTTTCCATGGTCTAGTTCATTGCGTCGACATATTCTTACTCATACTGGCCAAAAACCATTCAAATGTTCTCATTGtccattattatttacaacGAAGAGTAATTGTGATCGTCATTTGTTACGTAAACATGGTAATGTTGAATCTGCTGTATCTTTATATGTACCAATTGAAGATATTCCAGATCCAATACCAACACCAAAAGCTGTTGCAGAAGCTAAAGCGGCTGCAGCATCAGCAGCTGCCGCAGCAATGCTTACTACAAATGAAGAAAATGAATTacccaaaataaattcaattaatttaacatcATCAGTCACAGCTAatcaaaatgttcaaaaatctATTATTGAACCACCAATAATAACATCTGCAGATTTACCATATAAATGTCATTTGTGTGATAGTTCGTTTAGTGAACGTTTACAATGTTTGGATCACATTAAAATGTCACATGTTCAAGAATTCGCTTTATTATTGGCTAAAGGTGCTATTGATACCGAAGCTGAACTTAATAATCAAATTCTTCAATCTAATGACGATGATGAAAGACGTACTGATGATGGACGTGGTAAATATCCAGATTATGCAAATCGTAAAGTAATTTGTGCATTTTGTGTACGTAGATTTTGGTCTACTGAAGATCTACGAAGACATATGCGTACACATTCTGGTGAACGGCCATTTCAATGTGAAATCTGTTTAAGGAAATTCACATTAAAACATAGTATGTTACGTCATATGAAAAAACATAATGgtaatcatcataataatatgCTAACATCTACAAATAGTGGTTCAGATATTTCAGATGATGAACAAACACCAACTAATAGACAAACCAATAATATAACTGgttcatcaaataataataataataatatgattttagcAAATTCATTAcgaaatcataaaattcatgATATTTTGAGTAAAGCGAATTTAAGTTGGCGTAATCAAATGGCACGTTTTGGTCTTATTGGTGAACATCAGAAAGAAAATATTGCATtccaacaacagcaacaacatcaacaaactGTTATTAAAACCGAACAAAATGGCGTTGATGATAATTTAGGTACATCAAATAATGGTATTACGACAACATCAAATTCAGatttaattggtaatttattGGGTATCAGTGATCaaggtattttaaataaattactatcaTCAGCTGATGAGGCTGcaaaatttttgggaattgataaataa
Protein Sequence
MIKTNNNNITSITATTTPNIKLEMDRRISTTSESSVEPMDLGRTPTPKKKFHTKDINNDTIINNTILNNIKLTNNIDSEENSYDSDEHENEYLQQQQQQHKNNITTNIKFTNKKLHRKNNNNNNNHHREKRIIQIEENDNPHSLRKKFRISTPNRNNNNLINHKNNNNNLILTKINNNNNNDDDEQQQHKFDNNITSINNDQQIVLKNDINNDDCCIGSGDDEDRTNNESGFVDTSGNNINSSPTSTSSSPESGIGERGDDVKYVCPICEIVSATPHEFTNHIRCHNYSSGDSENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQQHHQRNNSNNNNNSSTTVTTNGNDSSGGGGGVIQNKTSNNNGKPIKDNKINNNNKMNISINNNNNNNISGGSGNNSSSNGGESYESDGCSTDSSISADHVSNNIIINTTKNGNNNNNNNIINNNLNKRKSTDDFDNNGENILNGIIKRRIKTTINNNIINENDININTINNNNNNDNNISKLCCPVCNRYDFINMLTLGTHMDREHSDIPAKCRECDVVFKTHKQLNGHRCCNNNNNNDNDKLNITHGFRDLTFVDFSSEKFPLIAKSLCEQTLRTSISNQKFECPKCFRQFPCTSAVDIHVKECYYNDGNDEILTSSTISTTNKLIASLPTILPHDFSMRKKNITTKRKQSDEDSESSIDDDDNDNNNNHNNDDVNNVNRNRDEFFTHLDLQNKTTSSIMSSPCREKSDYNKSELDKTPTKITTTTGITSNHHLNTTNNNNTSYHNHQSPSFSLLQQQQVLQQQQNDSKDLADIQSILNVTSSSSNNFLRNFENNVNTPSSECGYGKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHISAAGAAGPFRCNMCPYSIHDKAALVRHMRSHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCDDPTKKLHLFSSPEFDNDDVVEINPTPKDRSTPVSHLKEMLQNDNKPMKIQVKSLEKLLDKSSISSYGHYDDREEKELDNESQSDTSHPIDLSMDVLDLSKKSTKVTENKLENDNVPEQPKIDMDLLQKNHQILLAQQQFLSENLPKIDSAQYFQFSQLCNNLVFPQLHPAFFLQNTFLPNNLADFNKFAPLLTTGIFGNPPAFNIPTALNVNIPNQQLLQPQEPQSPTKIFENPIQKLTTPSPVQLLPKSLTPSSNQLNITQHLSPTEQSTQAQQQQQQQQSQTKQMPQPIHNNNNNNGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQQWAQRQRTGQHVIRGRGNSSNVISQISSSHLRNSSISVNNNNNNNMSSSNHFSAISDQVKYAILAQQLKARKDTDILQQALSQGSNVNAFNNTLNNNNNNCTNVEDDDPKLIIDEDDEEDEEEDDDDDVEDVICDEPKPQDLSNTTEVTANKIAAKKVAETILEQAIKAGNNLSKKCLNNEDRNATKDFELKIANTMIARAESVGKYLKEVASSPFKDDQPDLVSVSKLVDNATIPLSFNNYFRPSDIANQMEQSDEEGLVASGSASDNNSGPEETLTNTNPDQKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDIPDPIPTPKAVAEAKAAAASAAAAAMLTTNEENELPKINSINLTSSVTANQNVQKSIIEPPIITSADLPYKCHLCDSSFSERLQCLDHIKMSHVQEFALLLAKGAIDTEAELNNQILQSNDDDERRTDDGRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHNGNHHNNMLTSTNSGSDISDDEQTPTNRQTNNITGSSNNNNNNMILANSLRNHKIHDILSKANLSWRNQMARFGLIGEHQKENIAFQQQQQHQQTVIKTEQNGVDDNLGTSNNGITTTSNSDLIGNLLGISDQGILNKLLSSADEAAKFLGIDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00643542;
90% Identity
-
80% Identity
-