Rlae025066.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987257.1:10130756-10137416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0064 0.74 11.4 2.5 1 23 1242 1265 1242 1265 0.94 2 12 6.2 7.2e+02 2.0 2.0 1 23 1401 1423 1401 1423 0.92 3 12 0.001 0.12 13.9 3.1 2 23 1426 1447 1426 1447 0.97 4 12 8.9e-05 0.01 17.3 0.3 3 23 1455 1475 1453 1475 0.98 5 12 9.6e-05 0.011 17.2 5.6 2 23 1482 1504 1481 1504 0.96 6 12 0.041 4.7 8.9 3.4 3 23 1542 1563 1540 1563 0.95 7 12 0.0036 0.42 12.2 0.3 2 23 1574 1594 1573 1594 0.97 8 12 8.9e-06 0.001 20.4 0.8 1 19 1600 1618 1600 1622 0.95 9 12 1.5e-05 0.0017 19.7 1.3 1 23 1630 1652 1630 1652 0.99 10 12 0.00012 0.014 16.9 7.6 1 23 1658 1680 1658 1681 0.96 11 12 0.031 3.6 9.3 5.4 1 23 1686 1708 1686 1708 0.98 12 12 0.015 1.8 10.2 5.6 1 23 1714 1736 1714 1737 0.93
Sequence Information
- Coding Sequence
- ATGATGCCTGAACTGATAACATGTCCAGTATGTACATTATTCCTTCACAAGGGTATGAGTTTAGCCGAACATTTGGATACTCATCCCAAAGAACAAGTTATTAGAGCATTGGTATCATTGGCAGCAATATCACCAGCATCAACACaatcaacaacagcaacaacaaccacGACTTCCATATCACCATCAACTGGAACAACAAATAAATCAAGTTCATCtttaccaccaccaccattaATATCACCACCAGTTTTACAATCACTACCACCATCTGTGACAACCACTGAAAATTCTCAATTCAATTGTAACAGTACATTGATATCATCATCAGCAGCAAGTACTTCATCAATAACAACTGCAGCTGGTGGTATTACAACTTatggaaaatgtattaataataagaCCACAAAAAATGATGACCAGCAACAGCTAAATTTTGCAGTAGTTGCTAGTAGaccaaatgaattatattatcaaattacCAGTGATGGACAAACAGGTCATCCagttatcaattataataataataataataccaatcAGCAATTGAATAGCCATCAACAAACGCATTTACaagatttctttaattatcaaaataaagcaACTAAAaaattaccaccaccaccaacttATGGTACAGCAATAAGTCAACTTCGATCTCAAAATAACCAAAGTAATAATTATGGACGAACACAACAATCAatgacattattaaattttcaaccaTCTGCATTACATAATTATGCTGTAGGAGATTGTACTTCTAATAATAGTCATAATAATATTCGTCAGAATCAAGAAACTTTAGATTATTCTTTACCAAAACAACAACAGCAATCAGcacatacaaatttattatcacCTTGTCATATAAAATCACAATATTCAACTACAATAgcagcaacaacagcaacaacaatacAATCAAAAGTACAACAATCAACATTATCAACATATTTATCATCaccgtcatcatcatcatcatctggatataatttcaatcaacaacaacagtcaataaaaaaacattgtCATCGTACACCATCACCACAAAATCTTTCATCATCTTCACCACGTCAAGCACCATCACCATCATCAGTTTTACGTTATGCTGAAAGTCCAGTATCTGTACAATATATTGAACGTGATAATGGTGAATTTTTAGTACAAGAATCACCACGGCATATTGTTCAATGTTTTGAAAAAGACGATGGACAGTTTTCGGTTATTGAAAAAGTTATTAGATCACCACCAGCTCTTGTTCAAATTgatgaatttgaagaaaattttaatgagtcATCAGTAACGAatcaaaatagtaataataataaactagaaaatgaaactaaattacgaacttcagaaattttaaaagatgaaaatatGAATGATGATGAAGAAGACTCTATCAGTAAAAATGAactaaagaataataatattgaaccaaCTACATCGAATTCagcaaaagaaattaataaatttgaaattgatagtGATGATGAAGATAATGATAATCATGaagatgatattattattattaaagatgaAATACCGCCGAAAAAGAATAATCCAAATGGTATTAAAGTATTGAGCAATGTTAAATTAGATCCTAACGAATCATTAgatattatggaaaatattaataaaattggtgtTCGTAATTGTTCAGATCATTTTTTCCAATCAATTGttcaatcaattaaaaaagaagaagatatgaaaatatcaaataataataacaatattactaCACAAACAGCAACAAGTTCAACAATAGCaattgataatgaaaaaattataaatcaaaatcattcattagataataatgtaaaattaataataaaaaagacgaCTAATACTATTGATGAAACACAAATAATATCAACATGTTCAACTGCTACTACCACTTCTGTTGTTGCTAATTCAATTGGAACAACAAGTGTAATACGTCTTGCTGGACAAAaagatgatttaaataaaatatcaaataatataataccaaCATGTACAGTTGATTTAACAATAAAACCATCAACATCGTGCCGTAGTggtattgataatataaaaccatataaaaagcATCCGAAAAaacttattgttaaatttaaaaatccaatAATACCGAAAATAACCATTGAACCGAATCAAATTACtaataacaaaaatgataatgatattacagaaattataaatttagatgaATCAAATTTGAAAACAGATGAAACATCAACTAaagatgatttattaaataatattgcttCTATTAGTGATTCtactattaatgaaaataataataacaaaaaggatgataaaatcaatataattttagatattaatgaAACAGTATTTTCAGTAACTGAAATACctgaaaatcataattatgaTGAAGACAATGATTGTAAAATGGATATTGGATGTTATAATATTACAGATCATAATATAGCAACAACTTCATCcggtaaaatagaaaaaaatgaaaattctgaaaaattgaatttaattaataatactaatGATGATGATTCTATGGAAATCGAGactgaattaaaaaattgtactaataacactaataaaaataataaattaatagaaaatttaaataaaattgaaactatGGCAGTGATTATTGAATTACCAGAAGAGAATAAGGAATCATTAAAAACTACAATTAAAAATGATCCTAATGAATCAtcactaaataaatttcaattaaattctacaTCAACATCCTTATCATCTACTTCTACTAAATCATCTATAAATGAATTGTGTTCAAAACCAGCGACAAGTTCTTTGTATTCACAGACTGAAGTTCAACAGCAAAATCAACAATCATCgtcaataacaaataattataatgattatccATTTAGTTTCTTATATACAGCATCAGCTAATGCaggaatacaaaataataattctattattgGTTCACAAACAATAAATACTACAATAGAattacatcaaaataataataataatcaaatatgtacaaataatttatcCTTAGGTTATCATCAAAATAGTGATGCAGCAATTGATTTATTTCAACaacatcattataataataatagtggcgCAATATTTCAATCAACATCAACATCAAATgcaaatcatttaaatgatttggAAGATGAAAAAAGTAGTTATTTAGATTTGGATGCATGTAGTAATAGTAAACCAATTAATAGTTGCTGTTCAGCAACTACTAGCAGTAATAGTAGTAATGGTATTGGTGGTATTTTAAGTAATCATGATCATCATCCATTAGTTGATGCATTAAATATTCGGACAGATGAAAAAATGCCAGCTAAAGGTGAGATTTCTGAACAGGAAAGTAATGGTGATATTGAAAATTCATGGAGTCAAcctTTATACACCGAATTAGCTTATAAATTTCCAAATCCATATGATCATTTTGTTAGCCGTGAAAGTTGGAGTTTAAGTcatgatgatttttttgttcCACACGATTTAAGCACATCTGGACGTACAAAATtCATTCCTGAGAAATCAcatcaacaccaacaacaaccaATTCCAACTGTATCCGAAGTAACCAGTACGATTAGTAGTAGTTCTGTAACTAAAaagaaaaccaataaaaaatctACTGTTACAACAACAACTGTAACTACTAGTACAGCAGCACCGATAGCAGAATCATCCAATCAACAAACAACATCATCGTCATCAGTAGAACCTgctgttaaaagaaaaatatttaaatgtgaaCATTGTGGTACAATATTTTATCGACTTAAAGATCGTAATAGTCATTTAATGGATCAACATCAATATAAACGTGTAAATCGTCGATTAGTACGTGAATTACCATCATCAACTATAACGTCTGCATCAATACTAATTAATCAAAGTGAAGTTTTATCAGAACCAAAATTAGAGCCAATtgattcaacaacaacaattctTGATaatggtaatataaaaattgaaaattcagatGATTTAATGGAAATACAAACAACAatagataataatatagttgATAATAGTACAGAAGATAAAAAACCAATATTACCTGTTGTAACAAAATTAGAACCAACCAATTTTCCACGTACTAAATATGATTCAATACGTGCAAATGTTTATCGTAtgctaatgaattttaatttatcagttCTACAACAAAAAGGTGGTATTGatgttgaagaaaaaaaagtatttgaatcaaaatcattttgttGTTATACATGTAAACGTGATTTTATTAGTGTTAAATTATATGATGAACATTTGGCGGAACATGCTGCTGAATGTTTTACatgtaataagaaattttcacgctggacatatttttcattacatttaaaACGTCACTTAGGTTGGAAAGATTTTTGGTGTACCCAAtgtgataaaaaatttgttatacgtAGTGCACTAATTGAACATATCCGTACACATACCGGTATTGCaccattaaaatgtaatttatgttcaaaatcatttaaacgttattcaaatttaacacaacataaaaaaatatgtcataGTAAAAAACCAATACGTACAAAAGAATATGTTTGTTATTGTGGTGAAGTATTACCATCTAAAGCACGATATTTATGGCATAAAGAAATTCATGATGCAAAACCAAAATGTTGTCCATGGTGTCGTGATCGTTTCGTGCATGCAAATAGTTTAAGACGTCATATACGTTTAATGCATTccgataaattttcatattctgaACCAGTTGAGTGTACAATTTGTAATCAAGTTTATGCTAAATCTAGTCTTAAAAGTCATATGACAACACATTCAATGGATACCCAACATGAATGTCCCATATGTAATAAATCATTTAGTActaaatggaatttaaaaattcatagttGGGTTCATGCTAATCGTACAGCCAAACCATTTAAATGTGAATATTGTACAAAAGCATTTGTTcgtgaaattgattataaaaatcatatgaaTTCACATAAACAAATACGTCCGTATACATGCGAATATTGTGGTTGTAAATTTATCCGGAAATATAACTATATGCGTCATCGACGAGAACATCATGGACAAAAGAAATTTAGTTGCGATCTGTGTAGTAAACTATTTCAtcgtcattattatttaattgaacacAGACGTATTCATACTGGTGAAAGACcatttttatgtacaatttgtGGTAAAagttcaacaacaaaaacaaatcacaataaacatttaaaaatacatcATTCAAGGGATCCTTTTACATCGGAATCTTAA
- Protein Sequence
- MMPELITCPVCTLFLHKGMSLAEHLDTHPKEQVIRALVSLAAISPASTQSTTATTTTTSISPSTGTTNKSSSSLPPPPLISPPVLQSLPPSVTTTENSQFNCNSTLISSSAASTSSITTAAGGITTYGKCINNKTTKNDDQQQLNFAVVASRPNELYYQITSDGQTGHPVINYNNNNNTNQQLNSHQQTHLQDFFNYQNKATKKLPPPPTYGTAISQLRSQNNQSNNYGRTQQSMTLLNFQPSALHNYAVGDCTSNNSHNNIRQNQETLDYSLPKQQQQSAHTNLLSPCHIKSQYSTTIAATTATTIQSKVQQSTLSTYLSSPSSSSSSGYNFNQQQQSIKKHCHRTPSPQNLSSSSPRQAPSPSSVLRYAESPVSVQYIERDNGEFLVQESPRHIVQCFEKDDGQFSVIEKVIRSPPALVQIDEFEENFNESSVTNQNSNNNKLENETKLRTSEILKDENMNDDEEDSISKNELKNNNIEPTTSNSAKEINKFEIDSDDEDNDNHEDDIIIIKDEIPPKKNNPNGIKVLSNVKLDPNESLDIMENINKIGVRNCSDHFFQSIVQSIKKEEDMKISNNNNNITTQTATSSTIAIDNEKIINQNHSLDNNVKLIIKKTTNTIDETQIISTCSTATTTSVVANSIGTTSVIRLAGQKDDLNKISNNIIPTCTVDLTIKPSTSCRSGIDNIKPYKKHPKKLIVKFKNPIIPKITIEPNQITNNKNDNDITEIINLDESNLKTDETSTKDDLLNNIASISDSTINENNNNKKDDKINIILDINETVFSVTEIPENHNYDEDNDCKMDIGCYNITDHNIATTSSGKIEKNENSEKLNLINNTNDDDSMEIETELKNCTNNTNKNNKLIENLNKIETMAVIIELPEENKESLKTTIKNDPNESSLNKFQLNSTSTSLSSTSTKSSINELCSKPATSSLYSQTEVQQQNQQSSSITNNYNDYPFSFLYTASANAGIQNNNSIIGSQTINTTIELHQNNNNNQICTNNLSLGYHQNSDAAIDLFQQHHYNNNSGAIFQSTSTSNANHLNDLEDEKSSYLDLDACSNSKPINSCCSATTSSNSSNGIGGILSNHDHHPLVDALNIRTDEKMPAKGEISEQESNGDIENSWSQPLYTELAYKFPNPYDHFVSRESWSLSHDDFFVPHDLSTSGRTKFIPEKSHQHQQQPIPTVSEVTSTISSSSVTKKKTNKKSTVTTTTVTTSTAAPIAESSNQQTTSSSSVEPAVKRKIFKCEHCGTIFYRLKDRNSHLMDQHQYKRVNRRLVRELPSSTITSASILINQSEVLSEPKLEPIDSTTTILDNGNIKIENSDDLMEIQTTIDNNIVDNSTEDKKPILPVVTKLEPTNFPRTKYDSIRANVYRMLMNFNLSVLQQKGGIDVEEKKVFESKSFCCYTCKRDFISVKLYDEHLAEHAAECFTCNKKFSRWTYFSLHLKRHLGWKDFWCTQCDKKFVIRSALIEHIRTHTGIAPLKCNLCSKSFKRYSNLTQHKKICHSKKPIRTKEYVCYCGEVLPSKARYLWHKEIHDAKPKCCPWCRDRFVHANSLRRHIRLMHSDKFSYSEPVECTICNQVYAKSSLKSHMTTHSMDTQHECPICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCTKAFVREIDYKNHMNSHKQIRPYTCEYCGCKFIRKYNYMRHRREHHGQKKFSCDLCSKLFHRHYYLIEHRRIHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -