Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987255.1:128164311-128166250[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00055 0.064 14.8 0.4 2 23 206 228 205 228 0.96

2 10 6.6 7.6e+02 2.0 0.3 6 23 237 254 237 254 0.96

3 10 1.4e-05 0.0017 19.8 2.7 1 23 260 283 260 283 0.98

4 10 0.0036 0.41 12.2 1.5 1 23 291 314 291 314 0.96

5 10 0.0012 0.14 13.7 0.8 2 23 323 345 322 345 0.94

6 10 0.088 10 7.8 0.8 3 23 353 373 352 373 0.95

7 10 0.07 8.1 8.1 0.4 2 23 382 403 381 403 0.95

8 10 0.00011 0.013 16.9 0.1 1 23 410 433 410 433 0.95

9 10 2.5e-07 2.9e-05 25.3 0.8 1 23 438 460 438 460 0.99

10 10 1.2e-05 0.0014 20.0 0.9 1 23 466 489 466 489 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00055	0.064	14.8	0.4	2	23	206	228	205	228	0.96
2	10	6.6	7.6e+02	2.0	0.3	6	23	237	254	237	254	0.96
3	10	1.4e-05	0.0017	19.8	2.7	1	23	260	283	260	283	0.98
4	10	0.0036	0.41	12.2	1.5	1	23	291	314	291	314	0.96
5	10	0.0012	0.14	13.7	0.8	2	23	323	345	322	345	0.94
6	10	0.088	10	7.8	0.8	3	23	353	373	352	373	0.95
7	10	0.07	8.1	8.1	0.4	2	23	382	403	381	403	0.95
8	10	0.00011	0.013	16.9	0.1	1	23	410	433	410	433	0.95
9	10	2.5e-07	2.9e-05	25.3	0.8	1	23	438	460	438	460	0.99
10	10	1.2e-05	0.0014	20.0	0.9	1	23	466	489	466	489	0.97

Sequence Information

Coding Sequence: atgaTATGCCGGCTTTGTTTAATGAATTCTGAAGCTTATTTACAATTCTTTGATAAAGAAGGATTAATATTAAACTTGGCGTCTAtcgtatcaaaatatttttggtttcagCTCCAAGAAAATGATCcaatatctaatataatttgcaataaCTGTTGGATTTGTGTTGAAagttttcacaaattttatacATCCATTGAAGAAGCACAAAACAACCTGaaagattttcaattaaattccaGTGAAGTAGAAACAAAAgttgcaatatttaaaatagaagaTAATTCCAaagatttcaatgatatttgtGTGGAATTATTTAATGAGAACCATTcaactacaaaaaatttacagatCTTACAGgactttaaaataagaattgaaaataGTTCAGAATATAATCACCTAgATccattagaaaagaaaaatgaagATACAAAAGGTCatattgtaaaaaaacaaaaatataaaataaaatccacTAAAAAGAAATGTAGTCGACCTAAAACATCTGATAATTTAAATACCGAAAAATGTGCATtaattaatacattaaaattagatCCTTTAGTAGAAGCTGCTCATGAtgctaaaatttcatcatttatgaatttaatttgtgaTGAATGCCAAGaagaatttccaaaatttatgttattaaaaaggCATGTAAGGACAAAACATAATCGCAGTGGATATGTTACTtgctgtaataaaaaattatataagcgAGTTTTCCTGTTAGAgcatattaatttacatttaaatccTGATTATTATAgATGTCAAGAATGTAATAAATCATTTGCCACTAGACAAtcttttgaaaatcataaattaactcGGCATCAAACAAATGAaacgaaaatatacaaatgtGATTTTTGTCCACGAAGAtatgctaaaaaatatttagtagctCAACATTATAAATTGTCTCACACAGGAGATAACGAAAAGAAATGGAAATGTGATATTTGCGATAAAggATTTGTTACCAAAAACCGAATGATGacccataaaaattatatgcataAAAATAGTTATTCAAAAATATGTGATATTTGTGCAAAAGTTTGTCGtagtaaatcaatttttgatagaCATATTCTCGAACATAAAGGCATTATTGAACCGAAACTACAATGTGAGATATGTGAAGCATGgcttaaaaattctttaagtttaaaaaagCATATGACACGACATAAAGAAGAAACTATTCAgcatatttgtaatatatgtgGGAAAATAGCACCGTCCAGAGGTGCACTTAAAAGTCATATTCGATATGTTCATACAGAAGCATTATATAAATGTACTGTTTGCgacaaatcatttaaaaaaccaATAGGATTAAAGgaaCATATGTCAACACATACTGGTGAAATACTTTATACTTGTTCTTTGTGCCCAAAAACTTTCAACTCAAATGCAAATATGTGGTCGCATAAGAAAAAAGCTCACCGAGATCAATGGGAAACTGatagaaaaaatagaaaagcaccacaagaaattgatttaaaaataaatttattagatgatgttaaactattttaa
Protein Sequence: MICRLCLMNSEAYLQFFDKEGLILNLASIVSKYFWFQLQENDPISNIICNNCWICVESFHKFYTSIEEAQNNLKDFQLNSSEVETKVAIFKIEDNSKDFNDICVELFNENHSTTKNLQILQDFKIRIENSSEYNHLDPLEKKNEDTKGHIVKKQKYKIKSTKKKCSRPKTSDNLNTEKCALINTLKLDPLVEAAHDAKISSFMNLICDECQEEFPKFMLLKRHVRTKHNRSGYVTCCNKKLYKRVFLLEHINLHLNPDYYRCQECNKSFATRQSFENHKLTRHQTNETKIYKCDFCPRRYAKKYLVAQHYKLSHTGDNEKKWKCDICDKGFVTKNRMMTHKNYMHKNSYSKICDICAKVCRSKSIFDRHILEHKGIIEPKLQCEICEAWLKNSLSLKKHMTRHKEETIQHICNICGKIAPSRGALKSHIRYVHTEALYKCTVCDKSFKKPIGLKEHMSTHTGEILYTCSLCPKTFNSNANMWSHKKKAHRDQWETDRKNRKAPQEIDLKINLLDDVKLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -