Rlae028440.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987258.1:1127321-1132227[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.46 53 5.6 0.5 2 23 216 238 215 238 0.95 2 17 0.00049 0.057 14.9 5.3 1 23 270 293 270 293 0.98 3 17 0.0014 0.16 13.5 0.4 1 23 300 322 300 322 0.98 4 17 0.0028 0.32 12.6 6.2 1 23 330 353 330 353 0.94 5 17 0.0088 1 11.0 1.1 3 23 360 379 359 379 0.97 6 17 0.095 11 7.7 1.6 2 23 416 438 415 438 0.88 7 17 1.2e-05 0.0013 20.0 0.5 2 20 445 463 444 466 0.92 8 17 0.0082 0.96 11.1 5.7 1 23 472 495 472 495 0.94 9 17 0.0064 0.74 11.4 0.8 2 23 665 687 664 687 0.94 10 17 9.8 1.1e+03 1.4 0.1 6 23 696 713 696 713 0.96 11 17 2.7e-05 0.0032 18.9 3.6 1 23 719 742 719 742 0.98 12 17 0.00011 0.013 16.9 0.5 1 23 749 771 749 771 0.99 13 17 0.00027 0.031 15.8 6.0 1 23 779 802 779 802 0.94 14 17 0.29 34 6.2 1.0 3 23 809 828 808 828 0.97 15 17 1.4 1.7e+02 4.0 0.5 2 23 865 887 864 887 0.90 16 17 2.1e-05 0.0024 19.2 0.5 2 20 894 912 893 915 0.92 17 17 0.0015 0.17 13.5 5.0 1 23 921 944 921 944 0.98
Sequence Information
- Coding Sequence
- atgattttttgctGTTTATGTTTGTTTGAAAGAACTAACTGCCTAAATATTTTCGATAATCACCATTCCACTCCATTATCCAATGATAATTTGtcagaattaattataaaatatttttggtttgagCATGAAGAAAATGCTTTTAAATCCAAGTTTATTTGTTCTGAATGTTGGGAAATcgttaaaaaatttcatgaacTATTTATTAAAGTAGAAGaaacacacaaaaaatattccaatataattataaaaactgatCCTCTTGATAAAATTCCTCAGACAGAGAATAAAAGTACTTTGGATTTTATTAAAGAGGAAACGAATGAATTGGACTTACATATATCTGATGTTGAAATTGTGAATGATTTACGAGatgaaaataatgttgaaattgaTGAAGAAGAAAGTGGAAGTAATTATGAAAGTATAAAAGATGAAGTTATTAAGGGGGATGAAGTAAGTTTATTTTGTCAAACAAATCGAAGAACTCGtagtaaaaattctaaaataaaatcagaTACAGAATACATAACTAAGAAATCtcaaaaaaaaggacataaagAACAACCtataagtaaaattgttagtgAACGAGTAAAGCAGTCTCATGAATATGACAAAAAAGTATCCAGTTTCATGAGCTTAACTTGTGATTTATGCTCTGAGGTCATTGCAActtttggtaaattaaaaacacattttcaAAAGTTTCACAATTTGAATGGTTATGCAGTTTGTTGCAATCGGAAACATTATAAACGGAATTTACTTATAGATCATATAGACACACATCTAAATCCGGATCATTTTAAATGTCCTACCTGTagtaaaacttttacaaataaagAATCTCACCAAACACATATAAAAACATTCCATTTGCCTGAGCGTATTGTTTACGAATGTGATGAATGTCCGAAAAAGTTTTCCTGGCGTTATGTATTAGTAGCACATAAAAAAACTCATGCTCCAAAAGAAGAATGGAAATACAAATGCAAAGATTGCGATAAAAcTTTTGCCAGTCATACCTTTTTATCTTCACATAAACACTATGTGCATAAAGTAACCAAAAAGATTTGTGATTTGTGTGGCAAATCAGTATCGAATACATCATTTCGGAAACATCAACTGAAACATAGCGGTATTGTTCAACCTAAAATACAATGTGAAATTTGTGGTGcatggttaaataaaaaatatataaaaatacatttgaaaAATCATGAAGAATCTGGTATTGACCATATTTGTATACATTGTGGTAAAAAATCCCCAAATAGTAAAGCATTATATAAGCATATTTATGAAGTGCACACGTTAAAGAAAACCATAAAATGTAATGTATGTGAGAAGACATTTAAAAGCAAAGATTTATTAACCCAACATATGCCCGTACATACAGgcgaaaataatttcttatgtcAATATTGTTCCAGAACCTTTAAGTTTAAGTCAAATTGGCATGATCATAAGAAAAAGGAACATCCATTTGAATTTGAAGAAGAGCGGCAAAGAcgattaactaaaataaaattaaataacagcGATGGTGATAGTACTATTAACAAATTAACGGAAATAACAACTCAAGATAatcaACTTGATAAAATTCCTCAAGTAGAAAATAAAAGTACTTTGGATTTAATTAAACAGGAAACAGATGATTTGAACTTACATATATCTGATGAAAAAGATGAACGAAATGAAGATAATATTCACATTGATGAAGAACCAAATGATaatacttttgaaaatattaaagttattaaagatgaaaaaaacTTACTCTATCCCACAAATCAACGAACCACACGTAGTAAATATTACAAAACGATTAAATCAGATGCAGAAGAGATAAGTAACAtttcacacaaaattaatttggtacaagaaaaaaaaggatctaAAGAACATCCCATAACTAAAGTTATTAGTTCAAGGGCAAAGCAATCTgatgaatatgataaaaaagTATCTAGTTTCATGACTTTGAACTGTGATTTATGTTCTGAGGTTTTTGGTACTTTCAgtaaattaaaaacacatttccgaaatattcacaatttataTGGTTATGCAGTTTGTTGCAATCGGAAATTGTATAAACGTAATTTACTTATAGATCACATTGACATACATCTAAATCCGGATcactttaaatgtcCTACTTGTGGTAAAACTTTCACAAACAAGGAATCCCATCAAATTCATATCAAAACATTTCATTTGCCTGAACGTGTTGTTTATGAATGTGATGAATGTCCAAAAAAATTTTCCTGGCGATATCTATTAATAGCACATAAAAAAACACATGCTCCGAAAGAAGAATGGAAATACAAATGCAAAGATTGTGataaaacttttgcTAGccataattctttaaattcacATAAGCATTATATGCAtagagtaaataaaaaattttgtgatttatgTGGTAAATCAATATTGAACTCATCATTTCGAGAACATCAACTAAAACATAACGGAATTGTACATCCAAAGATCCAATGTGAAATTTGTTGTTCATGGGTTactaaaagatatataaaaagacatttaaaaaatcatgATGAATCTGGTATTGATCATATTTGCATACATTGTGGGAAAAAAGCACCAAATATAAATGCATTAGCTAGTCACATTTATAAAGTTCATACTTTAAAGAAAACTGTAAAATGTAGTGTATGTGAGAAGACATTTAAGAGTAAAGATTTATTAAACCAACATATGCCAGTACATACAGGCGAAAATAATTACTCATGCCAATATTGTGCGAAGACatttaaatttagatcaaaTTGGCATGATCATAAAAAAACAGAGCATCCAATGGAATTTGAAGAAGCACGCCAAAGACGATTatctaaaatgaatttaaatagtgGTGGAAATAATATCGTTGGCAAATTAACTAAAACAACAGCTCCTGATGGCCTAAAAAttgaacaacaaaattaa
- Protein Sequence
- MIFCCLCLFERTNCLNIFDNHHSTPLSNDNLSELIIKYFWFEHEENAFKSKFICSECWEIVKKFHELFIKVEETHKKYSNIIIKTDPLDKIPQTENKSTLDFIKEETNELDLHISDVEIVNDLRDENNVEIDEEESGSNYESIKDEVIKGDEVSLFCQTNRRTRSKNSKIKSDTEYITKKSQKKGHKEQPISKIVSERVKQSHEYDKKVSSFMSLTCDLCSEVIATFGKLKTHFQKFHNLNGYAVCCNRKHYKRNLLIDHIDTHLNPDHFKCPTCSKTFTNKESHQTHIKTFHLPERIVYECDECPKKFSWRYVLVAHKKTHAPKEEWKYKCKDCDKTFASHTFLSSHKHYVHKVTKKICDLCGKSVSNTSFRKHQLKHSGIVQPKIQCEICGAWLNKKYIKIHLKNHEESGIDHICIHCGKKSPNSKALYKHIYEVHTLKKTIKCNVCEKTFKSKDLLTQHMPVHTGENNFLCQYCSRTFKFKSNWHDHKKKEHPFEFEEERQRRLTKIKLNNSDGDSTINKLTEITTQDNQLDKIPQVENKSTLDLIKQETDDLNLHISDEKDERNEDNIHIDEEPNDNTFENIKVIKDEKNLLYPTNQRTTRSKYYKTIKSDAEEISNISHKINLVQEKKGSKEHPITKVISSRAKQSDEYDKKVSSFMTLNCDLCSEVFGTFSKLKTHFRNIHNLYGYAVCCNRKLYKRNLLIDHIDIHLNPDHFKCPTCGKTFTNKESHQIHIKTFHLPERVVYECDECPKKFSWRYLLIAHKKTHAPKEEWKYKCKDCDKTFASHNSLNSHKHYMHRVNKKFCDLCGKSILNSSFREHQLKHNGIVHPKIQCEICCSWVTKRYIKRHLKNHDESGIDHICIHCGKKAPNINALASHIYKVHTLKKTVKCSVCEKTFKSKDLLNQHMPVHTGENNYSCQYCAKTFKFRSNWHDHKKTEHPMEFEEARQRRLSKMNLNSGGNNIVGKLTKTTAPDGLKIEQQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -