Rlae018927.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:131135562-131138322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00038 0.044 15.3 4.0 1 23 275 297 275 297 0.98 2 10 6.8e-06 0.00078 20.8 1.4 1 23 304 326 304 326 0.98 3 10 0.00015 0.017 16.6 0.9 1 23 332 354 332 354 0.98 4 10 0.001 0.12 13.9 1.8 1 23 400 422 400 422 0.95 5 10 2.7e-05 0.0031 18.9 5.9 1 23 428 450 428 450 0.98 6 10 2.7e-05 0.0031 18.9 0.8 2 23 464 485 463 485 0.96 7 10 1.8e-06 0.00021 22.6 2.6 1 23 491 513 491 513 0.99 8 10 0.0027 0.31 12.6 1.9 1 23 519 542 519 542 0.97 9 10 0.0039 0.45 12.1 2.5 1 23 548 570 548 570 0.97 10 10 0.11 12 7.6 2.2 1 23 628 650 628 650 0.93
Sequence Information
- Coding Sequence
- ATGATAAGGAAATGTTCTACAAATGATTATGATATAGAAAATGATGAACTTTACAAAAATGAAGAACTTTACGaagatgaatttaataatggaCAAAATACCATTAAATGtgAAGAAGCTAACTATAGTAATCTATATTTCATAGATCCAACTGTATCCATCGAAATTCCAGAAACGATATCAACAGAAATTGATGTACCTGGCATAAACAATATTGTTAAAGAAACAAAATACGaagaAAAAGAAGCTAATCTAAGTCGTGAAcatgacaaaattaataatgaaatacaaGTTAAATCCATTAAAGAAGAAGAAATCAATGGAGAattaaattcaaacaaattaaatcaacaaataaatgattttattgaagAAATACCTATTAATATACAATTGGAGGAAAGTAATGATATATTTGATGATAATCTACTAGATGATATTATTGAAGAAGATGAAACCGCattatcttttataaaaaatcatactGAGAATATTGATGTTATTGAAGAAACAGTATCGTACAGTGAACATAATCATactgaaaatattgatattgatacGAAGATTGAAATTAAACATGAAACCGAAATAGCTATAGagaatttagttaaaatacaaaataatactgatatcaatatagaaaattttagtgAAACTGGTAATAGTAGTAATGTAGGATTAGAAAATCAAATTAGCAATAGTTATAACGATGATCAAATGAATaaatcaacaataataaataatgaaaatgccACAAGAACTAATTGTGTTGATCGAAAACGAATAGCTATAACAGCTATATCAACAAAACgtgataattattatcattgtcCAGATTGTTCACGTTATTATACACGatttgaaacattaaaaatacattatcgTTCACATACTGGtgaaaaaaatccatataattGTTCAATATGTGATAAATCATTTAGTGCACCATGTAAATTAATACAACATCAACGTGTACATACTGGTGAACGTCCATATAAATGTTCATTATGTCCGCAAGCATTTAAAgctaaacaaaaactaaaaaatcatTTGGAATCACATCAAAAGGGTACAATTAAAACACCAGCTATATATATTGATGGTATATCAATATTAGAAAGACAACcagCTTGTCTAccaattctaataaataataaatttataacatcaTCTGAGGCTAAGAAAGAAGATGGACTTTATCATTGCCCAATTTGTGAAAGGAAATATCGTCGTTTCGAATCATTAAAGGAACATTCAGATATACATGTTGATGTAAAACAATATGAATGTCATATatgtaataaacattttacaaaactaCGATCACTTAGAGTTCACCTTAAATCACAtacaccaaataaaaatattagatggAACGGTACACCAATATCTTGTGATTTTTgtgaaaaaacatttaataacaaatattatttaaatgagcATTTAAGTGTACATTCTGGTAAACGGCCATATGaatgtaatatatgtaataagaaatttacatttaaatctaattttgtattacatGAAAGAACACATTCTGGTGATAAACGGTATCAGTGTTCATattgttatatgaaatttgtacaAAGTACGACAAAAATGCGTCATGAACGTGttgtacatttaaaattaccacCATTTACATGTCGATACTGTCAAAAAGGTTTTTATACATTaagcatatataaaaaacatataaatgagcataaaaataatgatgaagaaCTACTTACATTATCCGAATACAAAGATgaaatattgaatgaaaatgatgaaaataatgtgATTGTTAATGATAATGTTGAACAAACAATTattgttgataataataatgaagataataatataatagttGTTGAAGATCCTAAAATAAGTGATTTTATATGTTCTATTTGTGGTGCATATTTTGTTGATTGTGGACAATATATAGAACATTGTAAATcacatgataataatataaatgaacaaaatattgtaCATTATATGGAAGATCATATTGTTGGTAGTGAGGAAATTAttgtttaa
- Protein Sequence
- MIRKCSTNDYDIENDELYKNEELYEDEFNNGQNTIKCEEANYSNLYFIDPTVSIEIPETISTEIDVPGINNIVKETKYEEKEANLSREHDKINNEIQVKSIKEEEINGELNSNKLNQQINDFIEEIPINIQLEESNDIFDDNLLDDIIEEDETALSFIKNHTENIDVIEETVSYSEHNHTENIDIDTKIEIKHETEIAIENLVKIQNNTDINIENFSETGNSSNVGLENQISNSYNDDQMNKSTIINNENATRTNCVDRKRIAITAISTKRDNYYHCPDCSRYYTRFETLKIHYRSHTGEKNPYNCSICDKSFSAPCKLIQHQRVHTGERPYKCSLCPQAFKAKQKLKNHLESHQKGTIKTPAIYIDGISILERQPACLPILINNKFITSSEAKKEDGLYHCPICERKYRRFESLKEHSDIHVDVKQYECHICNKHFTKLRSLRVHLKSHTPNKNIRWNGTPISCDFCEKTFNNKYYLNEHLSVHSGKRPYECNICNKKFTFKSNFVLHERTHSGDKRYQCSYCYMKFVQSTTKMRHERVVHLKLPPFTCRYCQKGFYTLSIYKKHINEHKNNDEELLTLSEYKDEILNENDENNVIVNDNVEQTIIVDNNNEDNNIIVVEDPKISDFICSICGAYFVDCGQYIEHCKSHDNNINEQNIVHYMEDHIVGSEEIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -