Rlae019048.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:132694515-132695864[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3 3.8e+02 2.9 1.2 2 19 39 56 38 61 0.93 2 11 0.011 1.2 10.7 0.4 2 22 156 176 155 176 0.94 3 11 0.00038 0.044 15.3 3.6 1 23 191 213 191 213 0.95 4 11 0.0021 0.24 12.9 6.3 2 23 220 241 219 241 0.97 5 11 0.00095 0.11 14.0 3.9 1 23 248 271 248 271 0.93 6 11 0.012 1.4 10.6 7.0 1 23 277 300 277 300 0.92 7 11 7.6e-06 0.00088 20.6 4.4 1 23 306 328 306 328 0.98 8 11 0.00016 0.019 16.4 0.3 1 23 334 356 334 356 0.98 9 11 5.1e-07 5.9e-05 24.3 2.6 1 23 362 384 362 384 0.99 10 11 0.00015 0.017 16.6 0.3 2 23 391 412 390 412 0.96 11 11 2.6e-05 0.003 19.0 0.0 1 23 418 440 418 440 0.99
Sequence Information
- Coding Sequence
- ATGCAAGAGGAGCAACTACCAAATGCTGTCTTTATAAAAGATGAATTTccatttgaattaaattcacCATTAAAAGGAATTGTTTATGTGCAGccagatgaaaaatattatatcaaatgtaGCCTCtgtgaattaaattttgaaataattgaaaactttaCAAAGCATTGTGTTCAAAATCATCACGACTCTTTCCTAGATTTACTACCTGTTGAAAATACATCCGGGAATTCGcaagaattattagaattcgctgaagaaaatttaaattcaactaAAGCAAAAGAATTTTCTAACGAAGATCCTTTTACTACCAGTGGTACAATTAAAAAAGAACAGAATGAATGTTGTCGAAATCAAgcaaaaattatcacaaattcaGAATTTGgaagtaaacaaaatattaaatgtgaaGATCAAAATATTGTccaggaaattgaaaataataaaactttgaatgaattaaaatgtgaaatatgCCAAAAACAGCTTATGAGTAGATCTGGTTATCTACGTCATATAAAACGGCAAAAATGCGGAATATCagatgaatttgaaataaatacttCTTTTAAATGTGAAATATGTGACAAagaatttacaacaaataaattattaaaatgtcatGAACTACGACATCAAAAAACGGATATATTAACTTGTACACATTGTAATACTGAATTTCGACACAAGAAAACTTTTTTAgatcatttaaaaatacattcagAATCAGCAAAAGCACACAAATGTGAAATTTGCTTAAAAGTATTCAGaacaaactataatttaaaatgtcatcGTATTATAGTTCATTCATCTGAaccattttataaatgtaatcaaTGCTCAAAGTCATTTCATTCACGTTATAAATTTAGAGAGCATAAAAGTGATTTTCATAATGGTCCACCAaaacataaatgtaaatattgttcGAAATCATTCAGAAGTTTTAGTTATTTGGAAGTGCACGAAAGAGTTCATACCGGTGAGAAACCATATCAATGTGAAATATGTGGACAAAGTTTTGCTGCAGTAAAACTTTTAACGAGTCATAATAAACGTCatacaaatgaaagaaattataaatgtgATATTTGTGGTAAATGTTTTTTCACAGCAACTTATTTACGTGATCATATGGTCAcgcatacaaaaattaaatcaatttcatgTGAAGTTTGTGATGCACGGTTTACGTTACGCAGTGCGTTGATCAAACATAGAAAATTACATTCCGGAATAAAAGAATATGTTTGCAAACTGTGTGGTAAGGCATACGCCCAAGGACCAGGTTTATATGCACACATGAAAACACATAAACTTGCACAAGAATCAACTGATCAGTAA
- Protein Sequence
- MQEEQLPNAVFIKDEFPFELNSPLKGIVYVQPDEKYYIKCSLCELNFEIIENFTKHCVQNHHDSFLDLLPVENTSGNSQELLEFAEENLNSTKAKEFSNEDPFTTSGTIKKEQNECCRNQAKIITNSEFGSKQNIKCEDQNIVQEIENNKTLNELKCEICQKQLMSRSGYLRHIKRQKCGISDEFEINTSFKCEICDKEFTTNKLLKCHELRHQKTDILTCTHCNTEFRHKKTFLDHLKIHSESAKAHKCEICLKVFRTNYNLKCHRIIVHSSEPFYKCNQCSKSFHSRYKFREHKSDFHNGPPKHKCKYCSKSFRSFSYLEVHERVHTGEKPYQCEICGQSFAAVKLLTSHNKRHTNERNYKCDICGKCFFTATYLRDHMVTHTKIKSISCEVCDARFTLRSALIKHRKLHSGIKEYVCKLCGKAYAQGPGLYAHMKTHKLAQESTDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -