Rlae033061.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:31903745-31905922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5 1.8e+02 3.9 1.1 2 23 55 77 54 77 0.91 2 15 0.00012 0.014 16.9 1.6 2 23 206 228 205 228 0.96 3 15 0.00053 0.062 14.8 1.2 2 23 253 273 252 273 0.97 4 15 0.0077 0.89 11.2 1.5 1 23 280 303 280 303 0.95 5 15 0.00014 0.016 16.7 0.5 1 23 309 333 309 333 0.97 6 15 0.0064 0.74 11.4 5.7 1 23 339 361 339 362 0.95 7 15 0.00023 0.027 16.0 0.4 1 20 368 387 368 388 0.95 8 15 9.7e-05 0.011 17.1 0.6 1 23 461 484 461 484 0.98 9 15 0.41 48 5.7 0.8 3 23 514 533 513 533 0.95 10 15 0.00023 0.027 16.0 2.9 1 23 540 563 540 563 0.97 11 15 0.0016 0.18 13.4 0.5 1 23 569 593 569 593 0.95 12 15 0.074 8.6 8.1 3.6 1 23 599 622 599 622 0.85 13 15 0.00033 0.039 15.5 2.4 1 20 628 647 628 650 0.95 14 15 0.0013 0.15 13.6 0.6 1 23 656 678 656 678 0.97 15 15 0.02 2.3 9.9 1.5 1 23 684 706 684 706 0.98
Sequence Information
- Coding Sequence
- atggaTCCTTTTAAAGATGAGAATCCagataaattagattttaaaacaGAATTTGACAATGAATCAAATTCTAAACAtgataattcagaaattttcagTTTTCCAAGTTTTAAATGTGGTGAAGTTTTTGTATCAAATTCAGCTAGTGGACAATTTgagttaaaatgtattttatgtagtagacaatttcaaaaaattaaacaatttgcaaaacatatattaaaagatCACTTAAATTCAGATCTAGAACATTCAATTGATGATTTAGTAAAAGATATTGAATTTGCAACAATATCAAGTATAGAAGATATTGATTCAGcagatgatgaaattgaaataccACCAGCAACAGAAGAGGAATTAACATATGATGTAAAGATATCAAATTTTCTtgataataaagaatttgaaaatgatgatgatgaagatgaaaaTGAGGAAATTAATGATAGTGATGAAAATTACCAAGATAATGAACTGAGTTCTGAGAACTCAGAAGAAgaatcaaaatttgtaaatagtGTAGAGAGTAATAGTGCTAGTGAGGATTCCATTTGTAATGAAActgtaataccaaaaataactGATAAACCAAAAATATCGATTAAAAAACTTCaatgtaaatattgtaaagcaaaatatatggttcaatcaaatttaaatagacaTATTAATCGTAAACATAGTGTACAATTAGAACGTCGTAATCGTAAAATGAAATCACcaacaacaattaataaatcaattgataaaataaaatgtaatgtttGCGGTaaagaaacaacaaaatataaattaatgcaaCATTTACGATCACATGATGACAGTCGTTATACCCATAAATGTGAGACATGCGGAAAACTTTTTATATCTGAACGTAGTTTAGATTTACATAACcgtaatttacatttaaaagaaCGACCTTATGCatgtaaatttgataaatgtGATCGGGCATTTGTGACTGAACATGGTTTAATAGCACACCAAAAAATTCATACAATGGATAGACCATTTATGTGTCCAATTTGTCATAAAGGTTTCTTTCGTAAAACAAAATTAGATTATCATTTTGAGACACATCATATTAACCGGCAGATATTCACTTGTGATGAATGTGGTAAACAATTTATGAATACAAAAACATTAGAAAGACATAAAATTTGTAGTCATCTTGATAATAATACGGatggaaaatttacaaattcagcTGATAATGATGCTAATAGTGATAAAGGAAAATTATTGCCAACTGATATTACAAATTCTGTAAATGATTATGTACACAACGGAGATGATCCAAATCCAATTCATTCAACATGTTCACctaccacaacaacaacaaatatgcAACAAACTATTACAAATAAACGTGGAAATTATGAATGTACATTTTgcccattaaaatttatttataaagccAATTTAAGTGAACATATTATGCGTAAACATAGTTCACAAATTGATAAGAAAAAACTATTAGCGGAAAAAGCTGAAATTGATAAACGTAATGCATCAAAACCACAATCAACAGCTATTTGTGATATTTGTGGTAAAGAAACGTTAAAAACACGTATGCGCCAACATTTACGTTCACATGATAACAGTCGTTATACACATAAATGCGATCATTgcggtaaattatttatttcggaGAAAAGTATGAATATACATATacgtaatttacatttaaaagatCGTCCATTTCCATGTAAATATGATAATTGTAATAAGAAATTTGCTACAGAAAATGCTTTAAATGCTCATTTCACTATACATACATGCGAAAGACAATTTAAATGTAACATTTGTGACAAGGGTTTTTTTACACAAGCCAAACATGATTATCATGTTAAGACTTACCATATAAATGGTAGAATTTATAAATGTGATGAATGTGATAaaagattttatgaaaatggtAGTTTACAAGCACACAAAATATGTCACAGTAATGAAAAACCATTTGCTTGTGATGAATGTCCAGCAAGATTTCCAAGAGAACGGtcattacatatacataaacaGTCACATTCTGgtattaaagaatattattgtaaaatgtgTAATAAGGATTATGCATTATATAATGGAATTTATACACATATGAAAACTCATGGTATTTCATATTCAGCGGCAATGGAAAAAGGTTTGGCTGGCCAGAGATCCAGTAcgtaa
- Protein Sequence
- MDPFKDENPDKLDFKTEFDNESNSKHDNSEIFSFPSFKCGEVFVSNSASGQFELKCILCSRQFQKIKQFAKHILKDHLNSDLEHSIDDLVKDIEFATISSIEDIDSADDEIEIPPATEEELTYDVKISNFLDNKEFENDDDEDENEEINDSDENYQDNELSSENSEEESKFVNSVESNSASEDSICNETVIPKITDKPKISIKKLQCKYCKAKYMVQSNLNRHINRKHSVQLERRNRKMKSPTTINKSIDKIKCNVCGKETTKYKLMQHLRSHDDSRYTHKCETCGKLFISERSLDLHNRNLHLKERPYACKFDKCDRAFVTEHGLIAHQKIHTMDRPFMCPICHKGFFRKTKLDYHFETHHINRQIFTCDECGKQFMNTKTLERHKICSHLDNNTDGKFTNSADNDANSDKGKLLPTDITNSVNDYVHNGDDPNPIHSTCSPTTTTTNMQQTITNKRGNYECTFCPLKFIYKANLSEHIMRKHSSQIDKKKLLAEKAEIDKRNASKPQSTAICDICGKETLKTRMRQHLRSHDNSRYTHKCDHCGKLFISEKSMNIHIRNLHLKDRPFPCKYDNCNKKFATENALNAHFTIHTCERQFKCNICDKGFFTQAKHDYHVKTYHINGRIYKCDECDKRFYENGSLQAHKICHSNEKPFACDECPARFPRERSLHIHKQSHSGIKEYYCKMCNKDYALYNGIYTHMKTHGISYSAAMEKGLAGQRSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -