Rlae019541.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:142465780-142466904[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0039 0.45 12.1 3.6 1 23 68 90 68 90 0.97 2 9 0.005 0.58 11.8 4.1 1 23 137 160 137 160 0.92 3 9 5.2e-05 0.006 18.0 0.5 1 23 167 189 167 189 0.99 4 9 4.1e-06 0.00047 21.5 0.5 1 23 195 217 195 217 0.98 5 9 4.8e-05 0.0056 18.1 1.8 1 23 223 246 223 246 0.96 6 9 0.00021 0.025 16.1 0.9 1 23 252 274 252 274 0.98 7 9 9.7e-06 0.0011 20.3 2.6 1 23 280 302 280 302 0.98 8 9 0.00046 0.053 15.0 5.6 1 23 308 330 308 330 0.98 9 9 2.8e-07 3.3e-05 25.1 0.6 1 23 336 359 336 359 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACATTAATGATACAACAAatgatgaatttataaataatattgaaattgattgtaaaatattaagtaataatgATAACGAAAATAAGGAAATAgaaattccaaattataaaaacaataataaatttgataatagtTATACTTATGATTTAGATATATGTGAAATACCAAATAAAACGAAAGATAAATATGGTTTATATTCATGTGAATATTGTACGcgttcatatatttattatatacatttaaaatatcattatttagaACATAATTATCCAGATGAATTTCATAAGCTACCAATtcgtaaaaaaatatgtaatgaaaaaaataaatattttattaatattgatgataaaatACAATATCAATTAGAGCAAATGAAACGTAAACCAGATGATGatggtaatttttattgtggtatatgtacaaaaaaatttacacaatttcGTTATTATCGTACACATTATTATCAAGTGCATCAGAAATTTACAAATCCATATAAATGTGCATATTGTCCAATGACATTTATAACACGTCAAACATGGATGATACATGAACGAACACATACTGGAGAACGACCTCATCAATGCCCATACTGCCCAAGAGCATTTGCATtagatcaaaatttaaaacgacatattaatatacatttagGTGAAAAACCATATTCATGTTCATATTGTGATAAGAAATTTACCCAACCACAATCGAGGAATAGTCATGAACGTAATATACATACAAAAGAAAGACCACATCAATGTGAATTATGTGGTGTAACATATCCtcgtttaatattattaaaagaacatTATAAAAGACATACAAATACAAGGCCATTTGAATGTAATTTATGCCATaagaaatattatgataatgcatcattaaaaatccatttaaataCACATACCGGTGAACGGATATATGAATGTCAGatttgttttaagaaatttaaaaatgtgaaaTGTTTAAAAAGTCACCGGAAAATACATtccaacattaaaaaatatcaatgtaAGATTTGTGATGAAACATTTACACAAAATGCTGGTCTGTATTCTCATATGAAAGTATATCATGAGAGTGTAATGATAACAGAAGAAGAAGACGAAGAagatatagaataa
- Protein Sequence
- MEDINDTTNDEFINNIEIDCKILSNNDNENKEIEIPNYKNNNKFDNSYTYDLDICEIPNKTKDKYGLYSCEYCTRSYIYYIHLKYHYLEHNYPDEFHKLPIRKKICNEKNKYFINIDDKIQYQLEQMKRKPDDDGNFYCGICTKKFTQFRYYRTHYYQVHQKFTNPYKCAYCPMTFITRQTWMIHERTHTGERPHQCPYCPRAFALDQNLKRHINIHLGEKPYSCSYCDKKFTQPQSRNSHERNIHTKERPHQCELCGVTYPRLILLKEHYKRHTNTRPFECNLCHKKYYDNASLKIHLNTHTGERIYECQICFKKFKNVKCLKSHRKIHSNIKKYQCKICDETFTQNAGLYSHMKVYHESVMITEEEDEEDIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -