Rlae031198.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987258.1:56208782-56212184[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4 1.6e+02 4.1 0.1 2 19 32 49 32 52 0.84 2 15 0.00058 0.067 14.7 1.0 1 23 101 124 101 124 0.92 3 15 0.00038 0.045 15.3 0.3 1 23 127 150 127 150 0.98 4 15 0.38 44 5.9 0.1 3 13 160 170 159 171 0.90 5 15 6.4e-06 0.00075 20.9 0.9 1 23 187 209 187 209 0.97 6 15 8.7e-05 0.01 17.3 3.6 1 23 215 237 215 237 0.98 7 15 4.7e-05 0.0055 18.1 3.7 1 23 243 265 243 265 0.97 8 15 7.8 9.1e+02 1.7 4.0 1 22 271 292 271 292 0.93 9 15 5 5.8e+02 2.3 3.5 1 23 635 659 635 659 0.95 10 15 2.7e-06 0.00031 22.1 0.6 1 23 680 702 680 702 0.98 11 15 6e-05 0.007 17.8 2.7 1 23 710 733 710 733 0.96 12 15 0.025 2.9 9.6 0.1 2 22 738 758 737 758 0.92 13 15 0.00012 0.014 16.8 0.0 1 23 777 799 777 799 0.98 14 15 0.0075 0.87 11.2 8.2 1 23 805 827 805 827 0.98 15 15 2.7e-05 0.0031 18.9 0.2 1 23 833 855 833 855 0.98
Sequence Information
- Coding Sequence
- ATGATGGCATTTGCCACAAAAAATGAAAAGGAAAAAATTACATGGTCAGATTCAGAAGATTCTTGGGATGAATTTGAGAAAGCTAAGGACCGAAAATGCACTTATTGCaCGAAAACTTTACAATCAGCACAAGATGTTGTAGTACATGAACAAAATTGTAGTATAGCTAAAACATGTTCAACCGCAAAAGTTACTTGTAAAGATggtacacaaaaatttatatgtgatATTTGTTGTTCAACTTACAAATATCTATTTAAATTGGCTGAACATGAAAAACGACATGAACCACCGGGtggatttatatgtaaatattgtgaTACACCTTTTTGTACGGAAGTTCAGCTAGAAGAGCATACAGAAGAAACACATAAAgtatttaaatgtcaaatttgtaAAGATACATTTGAAACCGCTGATTCATATATTTCACATATACGTATTTTACACAATGGACATGATAAAGAATATAAAGCATGCGAAGAATGTGGACGACATTTTAAATcaccattaatattaaaatttcataaagagacaaatTGTGGTCAAAATAAACGTTACAATTGTGATGAATGTGGTAAAACATTTCAAACAAATGGAACAttaaaaactcataaattaaTACACAGTGGTGAAAAGAGATTTTGTTGTAGTTTTTGTGGTATGAAATTTACAGTTAAAGGATTATTAACAAGGCATGAAAGAACACATACTGGTGAAAAACCATATAGTTGTAatttATGTCAAAAATCATTTTCTCATCGGGACAGTTTAATAACACATTCCACAACTCACACTGGAATTAAACCATATATATGTGAATGTTGTGGTTCAAGATTTTCGTGCACATCAAATCTTATTCAGCATCGACGAAAACGTCCAGAAACATGTGGTCTaccagaaaattgtaaaaaattaacaaaagctTGTCCACGGCCTGGAGTTAATAatCCAGAATTTCTAACATCACATGAACCTGTTCGATTATTCAAATCTCATCGTGTTATTAAATCaacagaaaaagaaaaactcAAAGAGAAACTTAAAGCTGCACGTGATGAAaagaaattagataaaaaacCAATtcgaaaaaagaaaagaaaaataattattgataaaaataatattgaaaaatcatctAATGAAAGTAATGTTTGTGtagaaataaatgataaaaacttaaatttatgtaaaactgaAGTTAAATctgaaaatgttgaatgtttcgaagaaaatattttggaaatttcaaAAACTAATACTACTAAGAAAATAACTAAAGTGAAAATAACAGATAATAGTACTGCAAGTATTGAATTAAGAAGATCTGCTAGAATTAAAgatggaaaaaaaattgaattaatttttccaacACCTATTGAAGATGAAGAAAATActgatattattacaaaaatgggTGTTACGGATACAATTAAAATGGAAGTAGAAGCAGATCCATggaatattaaacaaaatccaCTAACAACAATGGATATTGATAATGATATTAAAGAAGAGATTTCTATTGAACCAGAAATTACAATGAACGATTCTCAAACTAATCTCAataccAGTAATAATGTTGATATAAAATCTGAAGATGATGATTTTGATTGTAATGATGATTATCTTAATGACAATCAATCTAATGATAGTTCTTTAGAGACTGAATTTGAAGATAGTTTTAAATCGAAATCACCATGTAGAAAAAAGACTGATTCATCAAAAAAAataaaaaatgttagacgtcctaaaaaattattaaaacttatatctaaaaaagtagtgaatattgaaaatgaaccAAGTGAGaaaatgaatattgaaaatgaaccgagtgataaaaaaaatcaaattgaagattatgaaaataataaattacaaacaacaaaaaaacaatctttcGAATGCTATGAATGTCCAAATAAACTATATACTCGTAAAAATAGTTATCATATGCATTTGTTAAGAttccataataaaaatgaagatgAAATCAAACATATTTTTGATGTTCTTAATGAAAGTTTATCTGAATATTCTTGTAATATTTgtggtaaattttattcaatgccGAAAGCACTACAAAGTCACATTAAACGTcatggacCTGATGGATCActtgtatataaatgtaaaacttGTACGAAATATTTTGCAACTAAAgatgatttaaaattacattatcaaaatgatcataaagataaaataacttgtacaatttgtaataaaatttataaagattcTGAAATTTTGGCTGCACATAAACGTAAAAGTCGAAGTGCTCTTAATATTCATGAACGTTCTGATTGTGGTAAAAGtccaatttttaaatgtaatgttTGTGGTAAAGCATTAACAACAGCTGGTATTTTAAAAGCACATATGTTAATACATTCTGGTGAATTACCACATCAGTGTTCGTATTGTGAAAAACGTTTCCGGCAACGACAACAATTAACTTGCCATGAACGAACACATACAGGAGAAAAACCATATCCTTGCACGTATTGTGACAAAGCATTCgcatttgttgaaaatttatatattcatttatcAACTCATACTGGTATAAAACGATTTATGTGTATTACTTGTGGTGATAGATTTTCATGTATTTCTGGTTTAAAAAATCATTGGCGTACAAATGCAACAACGTGTGGATCAGATCCAAATAGATCAACAAAAGCAGTTGGTGAATATATGGGTTTTCAAAAAGGTCAATTAGTTCATAAGAAAAAAACAGGTTAA
- Protein Sequence
- MMAFATKNEKEKITWSDSEDSWDEFEKAKDRKCTYCTKTLQSAQDVVVHEQNCSIAKTCSTAKVTCKDGTQKFICDICCSTYKYLFKLAEHEKRHEPPGGFICKYCDTPFCTEVQLEEHTEETHKVFKCQICKDTFETADSYISHIRILHNGHDKEYKACEECGRHFKSPLILKFHKETNCGQNKRYNCDECGKTFQTNGTLKTHKLIHSGEKRFCCSFCGMKFTVKGLLTRHERTHTGEKPYSCNLCQKSFSHRDSLITHSTTHTGIKPYICECCGSRFSCTSNLIQHRRKRPETCGLPENCKKLTKACPRPGVNNPEFLTSHEPVRLFKSHRVIKSTEKEKLKEKLKAARDEKKLDKKPIRKKKRKIIIDKNNIEKSSNESNVCVEINDKNLNLCKTEVKSENVECFEENILEISKTNTTKKITKVKITDNSTASIELRRSARIKDGKKIELIFPTPIEDEENTDIITKMGVTDTIKMEVEADPWNIKQNPLTTMDIDNDIKEEISIEPEITMNDSQTNLNTSNNVDIKSEDDDFDCNDDYLNDNQSNDSSLETEFEDSFKSKSPCRKKTDSSKKIKNVRRPKKLLKLISKKVVNIENEPSEKMNIENEPSDKKNQIEDYENNKLQTTKKQSFECYECPNKLYTRKNSYHMHLLRFHNKNEDEIKHIFDVLNESLSEYSCNICGKFYSMPKALQSHIKRHGPDGSLVYKCKTCTKYFATKDDLKLHYQNDHKDKITCTICNKIYKDSEILAAHKRKSRSALNIHERSDCGKSPIFKCNVCGKALTTAGILKAHMLIHSGELPHQCSYCEKRFRQRQQLTCHERTHTGEKPYPCTYCDKAFAFVENLYIHLSTHTGIKRFMCITCGDRFSCISGLKNHWRTNATTCGSDPNRSTKAVGEYMGFQKGQLVHKKKTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -