Rlae019078.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:133036755-133037885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00016 0.018 16.5 1.0 1 23 77 99 77 99 0.97 2 10 0.00022 0.026 16.0 2.0 2 20 105 123 105 125 0.92 3 10 3.2e-06 0.00038 21.8 1.2 2 23 146 167 145 167 0.96 4 10 1.6e-05 0.0019 19.6 7.4 1 23 172 194 172 194 0.99 5 10 9.3e-05 0.011 17.2 0.7 1 23 200 222 200 222 0.98 6 10 0.0014 0.16 13.5 0.4 1 23 228 251 228 251 0.98 7 10 0.00082 0.096 14.2 0.8 1 23 257 280 257 280 0.97 8 10 7.1e-05 0.0083 17.6 1.2 1 23 288 310 288 310 0.93 9 10 0.00077 0.089 14.3 0.3 1 23 316 338 316 338 0.96 10 10 3.2e-05 0.0037 18.7 0.4 1 23 344 366 344 366 0.97
Sequence Information
- Coding Sequence
- ATGTCATCGAGGAAAAAAAATGTAGTTACATTggataaaaatgtatttgatccattaaatttagaatatgaaGAAGATATCAAAGTCGAAACTGAATCATCTGGAAAAGATTATTTTTGCGAAATAGAAGTAAGTACCATAGCAAAAGTAGGTGATGCGAATTCAACAAATTCTGATGAAGACGGAATATTTGATTTCAATGAGAATGAAATGGAAGAGACGTTTCCTTTTAAATGTGACATTTGTAATAAGTcgtataaactaaaaaatgcaTTTGTTGCTCATAAAATGCTACACGAAAATGTAATACCTAGTTGTTCACATTGTGGCAAGAATTTTGAAGATAAACAGTCATTTAAAAGACATAATCAAATACTGTGTGCACAACGAAAAGAACTTGGTGTTAAAAATACATCAAAAGAGTTAGaagatattaaatgtaaatattgtccgaaaatatttaaaagatattcaTCTCTTAAATGGCATGAAGATCGTCATTTAAATTCTCCATTTAAATGCGAacattgtcaaaaaaattttatgcgAAAACATTTATTACGTGATCATTTAAGAACTCATACTGGTGAAAGACCGTTTAAATGTGAATATTGTCCAGCAGCTTTTGGCCATGTAGCAAATTTTAAACGACATACCTTAATACATGTTGGagaaaaaacttatatatgtaCTTTTGGTTGTGGCAAAGCATTTTATATGGAACGTGAACGTACCGCACATGAGCGTACCCATACTGGTGAAAAACCATATATGTGTGAATTATGCGGACGTTATTTTTCGTATTATGCGGACGTTAGGTTGCATAAGAAACGCATTCATATGGATAGGAAACACTGGTCACATAAGTGTGATCAATGTACTAAAGTTTTTGCAACAGCAAAACAACTACGGGAACATAATGTCGTTCATACTGGTGAAAAACCATTTGCATGTGATCAGTGTCCTGGGCGATTTAGTAAAGCGAGTGGTTTGAGAGAACACAAGAAACTACATTCGGGTGTAAAGAAACATGTGTGTAGCATTTGTAATAAAGCATTTGCTCAAACTGCTGGTTTATATGGTCATATGAAATCTCAtggaattattaaagaaaataccGAAATAAATTGA
- Protein Sequence
- MSSRKKNVVTLDKNVFDPLNLEYEEDIKVETESSGKDYFCEIEVSTIAKVGDANSTNSDEDGIFDFNENEMEETFPFKCDICNKSYKLKNAFVAHKMLHENVIPSCSHCGKNFEDKQSFKRHNQILCAQRKELGVKNTSKELEDIKCKYCPKIFKRYSSLKWHEDRHLNSPFKCEHCQKNFMRKHLLRDHLRTHTGERPFKCEYCPAAFGHVANFKRHTLIHVGEKTYICTFGCGKAFYMERERTAHERTHTGEKPYMCELCGRYFSYYADVRLHKKRIHMDRKHWSHKCDQCTKVFATAKQLREHNVVHTGEKPFACDQCPGRFSKASGLREHKKLHSGVKKHVCSICNKAFAQTAGLYGHMKSHGIIKENTEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -