Rlae029638.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987258.1:24794908-24798999[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.072 8.4 8.1 1.8 1 23 65 87 65 87 0.97 2 16 0.047 5.5 8.7 2.4 1 23 93 116 93 116 0.93 3 16 0.0013 0.15 13.6 0.3 1 23 119 142 119 142 0.98 4 16 0.074 8.6 8.1 0.2 1 13 150 162 150 168 0.89 5 16 4.2e-05 0.0049 18.3 1.5 1 19 179 197 179 201 0.95 6 16 9.1e-05 0.011 17.2 2.9 1 23 207 229 207 229 0.98 7 16 0.00055 0.064 14.8 0.4 1 23 235 257 235 257 0.96 8 16 0.00011 0.013 17.0 1.7 1 23 557 581 557 581 0.97 9 16 4.1e-05 0.0048 18.3 4.5 2 23 607 628 606 628 0.97 10 16 2.7 3.1e+02 3.2 6.3 2 23 637 659 636 659 0.91 11 16 1.6e-05 0.0019 19.6 0.3 2 23 664 686 663 686 0.96 12 16 0.00077 0.089 14.3 0.2 1 20 699 718 699 720 0.93 13 16 0.00088 0.1 14.1 1.5 1 23 728 750 728 750 0.98 14 16 0.0021 0.25 12.9 4.3 1 23 756 778 756 778 0.98 15 16 1.2e-06 0.00014 23.2 0.2 1 23 784 806 784 806 0.98 16 16 0.0051 0.59 11.7 1.3 1 23 812 834 812 834 0.98
Sequence Information
- Coding Sequence
- atgattaaaaatatcgaTTGGTCTGATTCAGATGATTCTAATGATGTACTTGGGAAATCAAAAGAAGCTCGATGTAGTTATTGTTgtaaaatattatcaaatgaaTTGCAAATTTGTGAGCATGAGAGAACTTGCGAAAATGCTATTAATTGTACAGCTCGCAAGGTAACATGTAGAGATGGTAGTTGGAAGTTTATATGCGATATTTGTTGTCGTACATATAAATATGCTAATAGTCTTGCAGAACATGAAAAGCGACATAAAGCACCGGGTGGTTTTGAAtgcaaatattgtaaaaatagatATTGTTCCGAAATTGAATTAGAACAACATACAGAGGAGACACataagGTTTACAAATGTCAGATATGCAAGGATACTTTTGATACTGCCGATTCTTATATTGATCACGTTAGAATAACCCATAATGGTCAGGATAAATTATATCATGTTTGTGAAGATTGTGGTAGACAATTTAgttctttacatattttaaagtttCACAAAGATACAAAATGTGGTACACTGCGGCCATATAATTGTGGAAAATGTGATAAAactttcaaaacaaaatatttattaaaagcacATGATTTATTACACATCGAAGGTAAACAATATTGTTGCAGTTTTTGTGGTAATAAATTTGCAACAAAAGCGGCATTACAACGACATGAGAGGCGCCATACTGGAGAGAAACCATTTAAATGTCAGgttTGTGATAAGACTTTTGCATATGGGGAAAGTTTAGTAACCCATAGTTCTGTACATACTGGGATAAAACCATATTTGTGTGAATGTTGCGGATCAAGATTTTCCTGTACTGGAAATTTGTTAGCACATCGTAGAAAAAGATTAGATACTTGTGGACTGCCGCAATATTGTACAAAATTAGCAAAAGCTTGTCCTCGGCCAAGTATTAAAACAAATGAGCATTCAAAATCATTAGCTATTAAAGCCCATAAAGTATTAAAAGATGGAGAAGCcagtaaattaaagaaaactagAATTAGTATAAAACGTGGGCTAAAAAGTGAATGCTATAATCAAGACttcaaaatagataataaaattatttttaaatatgaagatGAAGATGAAGTACCATTGGCAGTAGTTAAAGAAATATTCGATACGGAAATAaagaataatcaaaatttcaacatatctgctgcaaaaattaaaaatgaaattttattatcaaatgaaTCGaagtttaataatgaaataatttctaaagtaaaaaatgaagaagataATACTTTGAATGTAGAAATTCTAGAATATGAATTAACACCACATATGACTTACAAAAAtgATACTACAGATTTTTCACCGTCACATAAAAGTGAAGATAATAATAGAGATTTAAGTAACGATTGGGTTGATAGTTTTTCAGACAATCTTGATATTCCTATTCcaccaacaaataataaaactaaagatgatattaattcatttcaaaaatctCCGAAttctaaagaatatttaattaaaagtgaagATGATAATGCGGATACTGAAACCAGTGATGACATAGAAAATAAGAGTGgtatatgtattaaatattctttaagaAATCCATTAGAAAATAGTCGATTAAAAGGAGaagataataatgatattgataatataCCAATAGAAGATAAACGAAAAATACAACACAAGTTTGAATGTCCGGAATGTTTTAGTAAAAGTTTTAGAACAAAATCTACTTTTATAAGGCATTTACGTAATATTCATAAGAAACATGCAACagatatatggaaaattttattggttAATAACGATGATACTGGCAATATATCATCAGATTTGCAATGTAAAGTTTGTGGAAAATGTTATTCACATGTTAAAACTTTACAGAAACATTTGCAAGTTCACGGTCCGGATGGTAGTCTTATACATATATGCCgttgttgtaataaatattttgcaactAAAGAAGAAGTTTGCACACACACAATGACTGAACATAGAGACAAAATTACATGtacaatatgtaataaaatgtatagaGATGCTGAATTATTACAAGCACATCGGCGATATTCACATTCTGATGAACCAAGtggtaaaccaaaaaaatatacatttatttgtaataaatgtgGTAGAACATTATCAAGTCGTACAGCATTGACAAATCATGAACTATCTGATTGTGGTAAAAGTCCAATACATAAATGCAATGTTTGCGAAAAAGGTCTACATAGTGCTGGTTCTTTAAAATCCCATATGCTTGTACATTCTGGTGAATTGGAATTTAAGtgtaaattttgtgataaaGGTTTTGCTCGAAAGGGTCAATGTCAGATACATGAACGAAAGCATACTGGAGAGAAACCTTTTCCGTGTACGtattgtgATAAAGCATTTGCTTATCGAGAAAACTTACTTATACACATTTCAACTCATACTGGTCTTAAACGTTATATGTGTAATAGTTGTGGGGAAAGATTTTCATGTGTTACTGGATTAAAAGCACACTGGAGAACACATGCAATTACATGCGGAGCAGATCCAAATCGTTCAACAAAAGCTACTGGGGTATATTTAGGATTTCAAAAGGGGCAATTAGTTCACACAAAAGAACCAACAGAATCAACggattaa
- Protein Sequence
- MIKNIDWSDSDDSNDVLGKSKEARCSYCCKILSNELQICEHERTCENAINCTARKVTCRDGSWKFICDICCRTYKYANSLAEHEKRHKAPGGFECKYCKNRYCSEIELEQHTEETHKVYKCQICKDTFDTADSYIDHVRITHNGQDKLYHVCEDCGRQFSSLHILKFHKDTKCGTLRPYNCGKCDKTFKTKYLLKAHDLLHIEGKQYCCSFCGNKFATKAALQRHERRHTGEKPFKCQVCDKTFAYGESLVTHSSVHTGIKPYLCECCGSRFSCTGNLLAHRRKRLDTCGLPQYCTKLAKACPRPSIKTNEHSKSLAIKAHKVLKDGEASKLKKTRISIKRGLKSECYNQDFKIDNKIIFKYEDEDEVPLAVVKEIFDTEIKNNQNFNISAAKIKNEILLSNESKFNNEIISKVKNEEDNTLNVEILEYELTPHMTYKNDTTDFSPSHKSEDNNRDLSNDWVDSFSDNLDIPIPPTNNKTKDDINSFQKSPNSKEYLIKSEDDNADTETSDDIENKSGICIKYSLRNPLENSRLKGEDNNDIDNIPIEDKRKIQHKFECPECFSKSFRTKSTFIRHLRNIHKKHATDIWKILLVNNDDTGNISSDLQCKVCGKCYSHVKTLQKHLQVHGPDGSLIHICRCCNKYFATKEEVCTHTMTEHRDKITCTICNKMYRDAELLQAHRRYSHSDEPSGKPKKYTFICNKCGRTLSSRTALTNHELSDCGKSPIHKCNVCEKGLHSAGSLKSHMLVHSGELEFKCKFCDKGFARKGQCQIHERKHTGEKPFPCTYCDKAFAYRENLLIHISTHTGLKRYMCNSCGERFSCVTGLKAHWRTHAITCGADPNRSTKATGVYLGFQKGQLVHTKEPTESTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -