Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987256.1:661144-670226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.9e-07 8e-05 23.9 1.6 2 23 172 193 172 193 0.97

2 11 1.5e-06 0.00017 22.9 0.5 1 23 199 221 199 221 0.98

3 11 5.2e-07 6e-05 24.3 0.6 1 23 227 249 227 249 0.98

4 11 1.7e-05 0.0019 19.6 0.9 5 23 261 279 255 280 0.91

5 11 9.5e-05 0.011 17.2 2.9 1 23 285 307 285 307 0.97

6 11 4.7e-05 0.0054 18.1 3.6 1 23 313 336 313 336 0.98

7 11 0.39 45 5.8 1.6 1 23 342 364 342 364 0.95

8 11 1.3e-05 0.0015 19.9 0.7 1 23 369 391 369 391 0.99

9 11 0.00038 0.043 15.3 0.7 2 23 398 422 397 422 0.96

10 11 6e-05 0.0069 17.8 0.2 2 23 570 592 569 592 0.93

11 11 3.4 3.9e+02 2.9 5.8 1 23 617 640 617 640 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.9e-07	8e-05	23.9	1.6	2	23	172	193	172	193	0.97
2	11	1.5e-06	0.00017	22.9	0.5	1	23	199	221	199	221	0.98
3	11	5.2e-07	6e-05	24.3	0.6	1	23	227	249	227	249	0.98
4	11	1.7e-05	0.0019	19.6	0.9	5	23	261	279	255	280	0.91
5	11	9.5e-05	0.011	17.2	2.9	1	23	285	307	285	307	0.97
6	11	4.7e-05	0.0054	18.1	3.6	1	23	313	336	313	336	0.98
7	11	0.39	45	5.8	1.6	1	23	342	364	342	364	0.95
8	11	1.3e-05	0.0015	19.9	0.7	1	23	369	391	369	391	0.99
9	11	0.00038	0.043	15.3	0.7	2	23	398	422	397	422	0.96
10	11	6e-05	0.0069	17.8	0.2	2	23	570	592	569	592	0.93
11	11	3.4	3.9e+02	2.9	5.8	1	23	617	640	617	640	0.95

Sequence Information

Coding Sequence: atggaGAGTATTTGTAGATTGTGTTTTCAACCCGCTGCGctATTTCAAGTCCCTGGATATAATTTACCAACATGTGTGAAATGTTCAGAACATTTAACAACAAATGGTTTATCAgcaaatttttatcaaacaatACGTCAAGATTTAGCTGCACAACAGCAACCAGCTAATTCAGTTGTTGCAACAACAGGAAGTGGTGGAGGAGGAGGCGGTGGTggtacaacaacaaataatattcaagttcaacaacagcaacaacaacaacagcaacagaaTAATAATCAACAAACATCATCAGCCTCTAGACAAGAacaacaaaatcataataatagtgATAATCATACAAATGCACAACAAGCAACTACAATAATTAATCAAGCTTTAAACTCAGTTGCTAATCAAAACGGCAATACAAAAAAATCTAGTGGTGGTGCTGGCAATACAACAATGtcatttgatttggaaaaaacAATGCAACATCTTGatgttgatttattatttaacgaAGAAGGATCATGTCCATTATgttcaaaaacattttcaagAAAATCATCACTTTTAACTCATATACGTAATCATTCTGCTGAGCGGAAATATGTATGCACTTTTTGTCAAAAAGGATTTACTCAAGCAGCTAATTTACGAAATCATGAACGTATACATACAAATGACCGACCATATATTTGTGTTGATTGTGGAAAATCATTTACAcaaataacaaatttaaataatcatagaAGACTGCATACTGGTGAACGGCCATTTGTTTGCATTGAAACGGAATGTGGAAGATCATTTGCccaagtaactAATTTGAATAATCATATGAAAACACACCATAAAGTTCAACAATATTGCTGTAATCAGTGCCCAAAAAAATTTACCCAAGTGACATCTTTAAATCAACATTTACAGGCTCATGCTGGAATAACCGGTTATTATTGTCCAAGATGTCCAGAGAAAACATTTAAACAACAATCGCAGCTTCATACACATATGAAATCACATGGTTTGGCATTTCCTTACGAATGTATTAAatgtgatgaaaaatttttacaACAAGCACATTTAGATCAACACAACAAAATGCATGacgaattcaaatttaaatgtgaCATGTGCCCGAGCTCTTTCAATCAGGAGGGTCTACTGAAGAAACATATACAAAGACATATCGAAGGAAGgtatataaCATGTCCGGTAGCTAATTGTAATCAAAGCTTCGCGGTTAAACAACACTTATCGAAGCACCTTCTAACTCGACATTCTCACAGTGAGCTTCCGCCACCGAAACGATCGAAAAAATCCCATCAAGTTGTTCAGGTTGGACATCAGGTTGGACAACAACAGCAAACGATGCAAGGTATGGTTGGACATCAAATTACAACATTAACAACACCTGGTCATGGTCAACgtggtcgtccaaaaaagaataaaaatcaacaacaacaaaatgccATAAATAATGTTCTAATCCAGgatcaacagcaacaacaaaaaaataatatgcaaGTTGGTACGACATCAATCCAATTAAATCAtatgcaacaacaacagcaacaacaggCCGCTGCTACTGCTGCTGCTGTAATTGctcaacaccaacaacaacaaaatggagAAATATCAGGAGGACATATTAAAACGACAAATAATGATGATCAACAAACCAATAACCATCAAGTAGATACTCAAAATGAGGATTTAAAATGTAATGACTGCGGATTGATGTTCCCAACTGCTAACGATTTGAGAGAACATATATTCTATAAACATCCCGAACGGAGATTTATGCAGGCAATATTAGAAGAAAACAGATATCTTATGAGAATACAAACTCAACAAAACTTCGTATGCAATCTATGCTGTCATGTATTTAAATCTCATTTAGCATTAGTCCGACATACAGCTAAATTTCATGGACAACTATTGTAA
Protein Sequence: MESICRLCFQPAALFQVPGYNLPTCVKCSEHLTTNGLSANFYQTIRQDLAAQQQPANSVVATTGSGGGGGGGGTTTNNIQVQQQQQQQQQQNNNQQTSSASRQEQQNHNNSDNHTNAQQATTIINQALNSVANQNGNTKKSSGGAGNTTMSFDLEKTMQHLDVDLLFNEEGSCPLCSKTFSRKSSLLTHIRNHSAERKYVCTFCQKGFTQAANLRNHERIHTNDRPYICVDCGKSFTQITNLNNHRRLHTGERPFVCIETECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPYECIKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEGLLKKHIQRHIEGRYITCPVANCNQSFAVKQHLSKHLLTRHSHSELPPPKRSKKSHQVVQVGHQVGQQQQTMQGMVGHQITTLTTPGHGQRGRPKKNKNQQQQNAINNVLIQDQQQQQKNNMQVGTTSIQLNHMQQQQQQQAAATAAAVIAQHQQQQNGEISGGHIKTTNNDDQQTNNHQVDTQNEDLKCNDCGLMFPTANDLREHIFYKHPERRFMQAILEENRYLMRIQTQQNFVCNLCCHVFKSHLALVRHTAKFHGQLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644401;
90% Identity: iTF_00644401;
80% Identity: -