Rlae031190.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987258.1:56047547-56051643[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.65 75 5.1 3.3 1 23 78 101 78 101 0.88 2 20 0.00018 0.021 16.3 0.3 1 23 104 127 104 127 0.98 3 20 0.49 56 5.5 0.1 3 20 137 154 136 156 0.85 4 20 0.00028 0.033 15.7 2.2 1 23 164 186 164 186 0.98 5 20 0.098 11 7.7 10.1 1 23 192 214 192 214 0.95 6 20 4.3e-05 0.005 18.3 3.6 1 23 220 242 220 242 0.98 7 20 0.00095 0.11 14.0 0.4 2 23 379 400 378 400 0.94 8 20 0.091 11 7.8 0.8 2 22 543 564 542 567 0.86 9 20 8.7e-06 0.001 20.4 1.1 2 23 589 610 588 610 0.97 10 20 0.37 43 5.9 1.3 3 22 729 749 727 752 0.85 11 20 0.0012 0.14 13.7 0.5 2 23 774 795 773 795 0.95 12 20 3.9 4.5e+02 2.7 4.4 2 23 825 848 824 849 0.91 13 20 4.1e-06 0.00047 21.5 0.8 2 23 874 895 873 895 0.97 14 20 0.7 81 5.0 2.2 1 23 901 924 901 924 0.96 15 20 0.00057 0.066 14.7 0.6 2 23 929 951 928 951 0.89 16 20 0.12 14 7.5 0.1 1 20 959 978 959 980 0.88 17 20 0.00057 0.066 14.7 0.0 1 23 988 1010 988 1010 0.98 18 20 4.7e-06 0.00055 21.3 2.5 1 23 1016 1038 1016 1038 0.99 19 20 3.8e-06 0.00044 21.6 1.5 1 23 1044 1066 1044 1066 0.98 20 20 0.36 42 5.9 2.1 1 23 1072 1094 1072 1094 0.98
Sequence Information
- Coding Sequence
- ATGGCACATTCTAAACAAAGTATTAGTTGGTCAGATTCTGGTGCAGAAGATTCAGAATTAGAAGAACAACATTGTAATAGTAAACTAGATAATAGACGTTttgaaatattaaaatgttccaTTGCTATTCCCGAACATATTAAAGTATGTGCAGTTGCACTTAAAAGTTCAGCTCGTTTGCATTTACGTTTTTTAGCTGAACATGAAAAACGACACAAGTCACCAGGtggatttttatgtaaatattgtgacaataaattttgtacCGAAGTTGAAAGGGAAAAACATACCGAGGACAAACATAAAgtctttaaatgtcaaatatgtaaagaattatttgaaactgcagaaaattatattgaacacATTAAAACCTTACATAATGGACAAAATCGTGAATATAAAGCGTGTAATGAGTGTGGTCGATTATTTAGTTCGCCATTAATACTTAAATATCATCAGGATACAAATTGTGGTATAAATGGTAAATTTGAATGTGAGCAATGTACAAAAACCTTTCAAACTAAAGGCAGATTAAAGATACATAAACTAACTCATACTGgtgaaaagaatttttgttgtagTTATTGTGGTCAAAAATTTCGACATTTTATGCATTTACAATCACATGAATTTAAGCATACCGGAAAAAAACCATATCAGTGCAATgtaTGTCAGAAATCATTTTCTCATCGAGCTAGTTTGTCGACACATTCAACAACTCATACCGGTTTAAAACCATATTTATGTGTATGCTGTGGTTCTCGATTTTCCTGTGCATCTAATATTATTCAGCACCGTAGAAAAAGACCAGACACTTGTGGATTACCAGAGTATTGTACGAAATTAACAAAAGCTTGTCCAATTgctaatttaaaaaATCCAAGTTTATTAACAGCTGAAGctcctattaaaattttcaaagctGTAAAAGTAATTAAGGAAAATGAAACCGAAGAACTAAAAAATCTGAAGAAAGAAAATCCTATAAAACGTTCGAGAAGAAAgggtaaaataaattgtaatgaatATCAAAATCAAGAATATAAACGAAATTCTTGTAATGTAAAACATTTACGTGATTATCATAACAAAAATgacaatgataataatgaattattaggaagaaatttgaaatgtatTATTTGTGGTAAAATTTATACACTTGAAAAAAATCTGAAGAAACATTTAGCAACACATCAAGAGAGAAATGtggtcaataaaaatataagcaCTGAAGAAAGTCAcattaatttgaattcattaaaaatagaaaataatatagtttttgaaaatgttcTCGATCCAATAGttcaacttaaaattaaatcagaatTAATGCCAACAGAACACTGTATAAATATGACGAATATTAAATCAGAATTAATACCAGAAGTTGctttaaatattacaacaatTATCGAAAATGCATCTGGAACTGAAGttgatgtaaatataaattgtgcCACCAGTGAAGACATTAATAATAGtgaaaaccaattaaataaaaaggaatATTTATCTGATTCCGAAATATCAAAGTGTGGTCTCAATGATCCACTTCAAAGTTCTGATCATGAAGATAAAAAAGTTGTTGCTAATTTTAAAGCGGAAAATACGAAAATGTCTTGTCCTGAATGTGTTGATCAAATTTTTActcataaaagtttatttattcgTCATTTACGTGGTCGTACTCATAATAAATCTGAACAAGatatcgaaaaaatattaaacaatttcaattacgGGAAACCCAATTTGAAATGTGAAATTTGTGGTAAATTATACACACTGTCGTCTTACCTAAAGCGTCATTTAAAAACTCATGATTCTTCACCAAAacagtgtttaaaaaaaattaatcgtcCACTTAGACTAGATACAGGAAAGAAAATAATACGATGTTATAAAtgtattgatgaaattttttattttaaaagtgtcTACATTAGACATTTACGAGGTCGTCATCATAATAAATCAACaagagaaattgaaaaaatattagaagaatTGAATGAAAATCAATTGAATGATAACAAATCTAATCAACATGAGTCTGAACAAGTTAATCATAATGAAAATgatgttTCTCATGAAAATTCACTTCAATTAGAATCGGAAAATGAAGATGTTTTAGAAGAACGttctaataaattaactaagGAGAAATCAATTCATTGTTTAGAatgtaaaaatcaatatttttcacaaaaaagtgAATATATAAGACATTTACGGGGACGCATTCATAATAAAACTgaagatgaaattgaaaaattaattgaaaacttgAATGgaacaaaaccaaatttaaaatgttatatttgtggtaaattatatacaattcaaTATTATCTTAAAAAACATCTTGAAGCTCATGATAATCCTAGGGAAACTATTTTACCCGATAAATCGGTACATTTACAATCAAATCTTGAAAGTAGCTTTGAAGGAAAGAAAATAATACGTTGTTATAAATGTACAGATCaagtatttaatcaaaaatgtttGTACATTAGGCATTTACGTGGCAGGCATCACAATAAATCTGaacaagaaatagaaaatttattacaaatgattAATGAAGGCAAGAATGgctcaacaaatttaaaatgtaaaatttgtgggaaaatatattcaattccgtattatttaaaaaaacacttaaaaacTCATGgAATTGATGCCACAcacaaatgtaaattttgtgatgaatactttttaacacaaattgaAGTATTGACACACATTCAATCCAAACACAAAGATCAATTAACATGTTCAATTTGTAGTAAAGAATTTTCTGATTTCGATTCACTTATACGTCATAATCAATTCGTACATTCCAATAAAgagaaaaaacaatttatttgtataaaatgtggTAAAACGACTTCAAGTAAAATAGCATTAAATGATCATGAATTATCTAATTGTGGTCAAAATCCAATTTATCGTTGTGATGTATGTGGTAAAGGTTTAAGTACAGCTGGAATATTAAAAGCACATATGATGTTGCATACAAatgattttccatataaatgtTCTTATTGTGAAAAAGGTTTTcgttttaatgataaattaaaggTTCATTTACGATCACACACAGGAGAGAAACCTTTTAAATGCCCAtACTGTGATAAGGCGTTCGGACATTCATCTACCTTATATATTCATGTATCCACGCATACAGGTATAAAACGTTATATGTGCACAACATGTAGTGATAGATTTTCATGTATTTCTGGATTAAAAGCACACTGGAGAACACATCCTACTACTTGTGGAACAGATCCGAATCGTACAACAAAACCACAAGTATTTATGGGATACCGAAAAGgcaaattagttaataaaaaagatattgtagaatga
- Protein Sequence
- MAHSKQSISWSDSGAEDSELEEQHCNSKLDNRRFEILKCSIAIPEHIKVCAVALKSSARLHLRFLAEHEKRHKSPGGFLCKYCDNKFCTEVEREKHTEDKHKVFKCQICKELFETAENYIEHIKTLHNGQNREYKACNECGRLFSSPLILKYHQDTNCGINGKFECEQCTKTFQTKGRLKIHKLTHTGEKNFCCSYCGQKFRHFMHLQSHEFKHTGKKPYQCNVCQKSFSHRASLSTHSTTHTGLKPYLCVCCGSRFSCASNIIQHRRKRPDTCGLPEYCTKLTKACPIANLKNPSLLTAEAPIKIFKAVKVIKENETEELKNLKKENPIKRSRRKGKINCNEYQNQEYKRNSCNVKHLRDYHNKNDNDNNELLGRNLKCIICGKIYTLEKNLKKHLATHQERNVVNKNISTEESHINLNSLKIENNIVFENVLDPIVQLKIKSELMPTEHCINMTNIKSELIPEVALNITTIIENASGTEVDVNINCATSEDINNSENQLNKKEYLSDSEISKCGLNDPLQSSDHEDKKVVANFKAENTKMSCPECVDQIFTHKSLFIRHLRGRTHNKSEQDIEKILNNFNYGKPNLKCEICGKLYTLSSYLKRHLKTHDSSPKQCLKKINRPLRLDTGKKIIRCYKCIDEIFYFKSVYIRHLRGRHHNKSTREIEKILEELNENQLNDNKSNQHESEQVNHNENDVSHENSLQLESENEDVLEERSNKLTKEKSIHCLECKNQYFSQKSEYIRHLRGRIHNKTEDEIEKLIENLNGTKPNLKCYICGKLYTIQYYLKKHLEAHDNPRETILPDKSVHLQSNLESSFEGKKIIRCYKCTDQVFNQKCLYIRHLRGRHHNKSEQEIENLLQMINEGKNGSTNLKCKICGKIYSIPYYLKKHLKTHGIDATHKCKFCDEYFLTQIEVLTHIQSKHKDQLTCSICSKEFSDFDSLIRHNQFVHSNKEKKQFICIKCGKTTSSKIALNDHELSNCGQNPIYRCDVCGKGLSTAGILKAHMMLHTNDFPYKCSYCEKGFRFNDKLKVHLRSHTGEKPFKCPYCDKAFGHSSTLYIHVSTHTGIKRYMCTTCSDRFSCISGLKAHWRTHPTTCGTDPNRTTKPQVFMGYRKGKLVNKKDIVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -