Rlae028139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhamphomyia laevipes
Gene Symbol
Paris
Assembly
GCA_963920725.1
Location
OY987257.1:57137577-57140510[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0013 0.16 13.6 1.6 1 23 130 153 130 153 0.93
2 16 0.00033 0.039 15.5 2.5 1 23 158 181 158 181 0.92
3 16 2.4e-05 0.0027 19.1 1.1 2 23 191 213 190 213 0.94
4 16 0.12 14 7.4 1.7 1 20 242 261 242 263 0.93
5 16 0.002 0.23 13.0 4.6 1 23 348 370 348 370 0.97
6 16 0.014 1.6 10.4 6.0 1 23 376 399 376 399 0.93
7 16 0.00039 0.045 15.3 0.5 1 21 405 425 405 426 0.96
8 16 0.00054 0.062 14.8 6.3 1 23 529 551 529 551 0.98
9 16 6.6 7.7e+02 1.9 6.5 1 23 557 580 557 580 0.91
10 16 0.00089 0.1 14.1 1.0 1 21 586 606 586 607 0.96
11 16 0.032 3.7 9.2 1.1 1 15 630 644 630 652 0.81
12 16 1.4e-06 0.00016 23.0 2.2 1 23 685 707 685 707 0.96
13 16 1.9e-05 0.0022 19.4 1.2 1 23 713 735 713 735 0.98
14 16 2.9e-05 0.0034 18.8 0.8 1 23 741 763 741 763 0.98
15 16 7.4e-08 8.6e-06 27.0 1.3 1 23 769 791 769 791 0.99
16 16 0.00032 0.038 15.5 0.4 1 23 796 819 796 819 0.97

Sequence Information

Coding Sequence
ATGGAATATAAAACTAGTTTATCTGACGATCACCCTAATTGGGTTGATGTTGATATTGAAGAAGTGTGTCGAATTTGTTTAAAATCAGACAACgatcttgttttaatatttgatgaattaaattcttataacaaaatttctttagCAGAAATGATTACAGAATGTTCAAATTGTAGagtCGAAAGACATGATGATTATCCACATCAAATCTGTCTTAAATGtattgaaactttaaaaatcgcttacaattttagattaaaatgtaaacaatCACATAAATTCGCGAAATTGGTTTTGAACAATGGCTATGAACCTAAGTTTGCTAttattgataatgataatttacCACCACTTGATAAATTTACCCAAACAGAAGCTTTAACATTTTTTCCATGTGAAAAATgtgatgaaaaatttatatcatatgaaaaattaagaACCCATAGATATTATAATCATAAGGGAACCAGTCACGAGTGCAGAGTGTGTAAAAAATCATTTCGTAGAATAGGCTACCTTAAAAATCACATAGCTTTTTATCATCCAGAACTAGGtttcgaaaataatattgaatgttCAATTTGTTCAAAAAAGTTTGGCAGGCCACAACATTTACGAAGGCATCAAATTAATATACACAATCAGGAATTTGATACTTCTTTGAGTAGCAAAAAAACTGAAgtatccaaaaaaaatcaattaaatgatgatacaattaaaaaatatatttgcgaATTGTGCTCCACAGAATGCGAAACCGAAGATGAACTTAAAAAGCATTCATGCATGGAAGATTTTGAAATATATATTAAATCTGAAGAAACAAAAATTCCAaagaataatattgaaaatgatgtaGAAACTGATGTTTTCGATTTACCTATTGACGATCATCAAACCGACGAAGACGATTTAAAACCACTTTCTATATTAAAAGAAgtatatgaatttgaaaaaacaaaaaatttaaatgatacaaatataaaaaaaataaaaaatatgaatgttgAAAAAGGAAAACATAAACAATTACAAACAGACTACCGTTGTCAAACttgccaaaaaaattttttgcgTCCTTATCATTTACGACGACATGAAAGTAgtcatctaaaaataaaatcatttaattgtaTTCACTGTAATAAAACATATTCACGATCAGATTATCTGGATAATCATATGACGAAATGTCATTCCGAAAAACAACTATTCAAATGTGAAAAATGCAGCAATAGTTTTCCAGAAAAGGAAAACTTGCTTCGGCATCAAAACGAGAACAAATTGTGCTCAATCAGATCCCAATCGGAAGATGACCTTAAAAAGAATTCTAgcaatgaaattattgaaaaGTCTAGTACatgtgaagaaaaaaattatgataatcaaGATAATGATTTCGAAAATGATGTATTAGATTTACCTATATCTGATAATCATAccgatgatgaaaatttaacacCACTTTCTAAATCGGAAAAAGTATATGAATCTGTAAAAAAAGATGATTTAAATGATacaaataaagtaataataaaaaataaaaaagttaaaaatggaAGGCGTACACAAATTGAAACAGAACATCGTTGTAAAATTTGCCAAAAAATGTTTTTGCGTGCTTATCATTTACGACGACATGAACGTAGTCATCTCAATGAAAGACCCTTTAATTGTATTCACTGTAAAAAATGCTATTCACAATCATATATTTTGGATAAACATTTGACGAAATTTCATTCGGAAAAACAACcgtttaaatgtaaaaaatgtaataatggtTTTCCAAAAATGGAAAATCTACGAAGACATCTGAATCAAAACCAATGTAATTCtgaacaagaaaaaaatgtaaaacaaaaaccaaaagttaaaaatccaaaattatataaatgtgaaaTTTGTCAAAAAGGTTTTACAACAGAACGTAGCCATGGAGTTCACGTGAGCAATCATAGTTCAAAAACATTTccatgtaaattttgtaaaatggtACATAAAACTAAAGCAGAATCTGTAGAACATTCAAAAACCCATGATAAAGAAAAACCATTTCTTTGTTCAAAATGTGGACACCGTTTTGTTcgtaatgataatttaattattcatatgcGACGGCATAATGGAGAGAAACcgtataaatgtaaattttgcaataaagGTTTCCCAAGATATGCAGATTTAAATGTGCATGAAAgatatcaTACTGATGAAAGAAATTTTGTGTGTAAAATATGTGGTAAAGGTTTTCAGCGTGGTCATCAGTTGGTGATACATACGAGAGTTCATACAGGGGAACGTCCTTACAAATGTTCAGAATGCCCAAAAAGTTTTGCACAACGTAACGATTTAAAAACTCACATACGTCGTCATACTGGTGAACGTTTTTATTGCGAAATTTGTAATGAAGGATTTATACAAGGATACCTTTtaagacaacataaaaaaacagcTCATGGTATTGATCAGCCATCTCAAATACATCGGCTAGAAAAAATTGCACCTGACCCAACAGTTTGTTAA
Protein Sequence
MEYKTSLSDDHPNWVDVDIEEVCRICLKSDNDLVLIFDELNSYNKISLAEMITECSNCRVERHDDYPHQICLKCIETLKIAYNFRLKCKQSHKFAKLVLNNGYEPKFAIIDNDNLPPLDKFTQTEALTFFPCEKCDEKFISYEKLRTHRYYNHKGTSHECRVCKKSFRRIGYLKNHIAFYHPELGFENNIECSICSKKFGRPQHLRRHQINIHNQEFDTSLSSKKTEVSKKNQLNDDTIKKYICELCSTECETEDELKKHSCMEDFEIYIKSEETKIPKNNIENDVETDVFDLPIDDHQTDEDDLKPLSILKEVYEFEKTKNLNDTNIKKIKNMNVEKGKHKQLQTDYRCQTCQKNFLRPYHLRRHESSHLKIKSFNCIHCNKTYSRSDYLDNHMTKCHSEKQLFKCEKCSNSFPEKENLLRHQNENKLCSIRSQSEDDLKKNSSNEIIEKSSTCEEKNYDNQDNDFENDVLDLPISDNHTDDENLTPLSKSEKVYESVKKDDLNDTNKVIIKNKKVKNGRRTQIETEHRCKICQKMFLRAYHLRRHERSHLNERPFNCIHCKKCYSQSYILDKHLTKFHSEKQPFKCKKCNNGFPKMENLRRHLNQNQCNSEQEKNVKQKPKVKNPKLYKCEICQKGFTTERSHGVHVSNHSSKTFPCKFCKMVHKTKAESVEHSKTHDKEKPFLCSKCGHRFVRNDNLIIHMRRHNGEKPYKCKFCNKGFPRYADLNVHERYHTDERNFVCKICGKGFQRGHQLVIHTRVHTGERPYKCSECPKSFAQRNDLKTHIRRHTGERFYCEICNEGFIQGYLLRQHKKTAHGIDQPSQIHRLEKIAPDPTVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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