Rlae028140.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987257.1:57141433-57143859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.17 13.4 1.1 1 23 80 103 80 103 0.93 2 13 0.00024 0.028 15.9 2.4 1 23 108 131 108 131 0.91 3 13 0.0001 0.012 17.0 1.9 2 23 141 163 141 163 0.94 4 13 0.62 72 5.2 3.4 1 20 192 211 192 213 0.92 5 13 3.3e-06 0.00039 21.8 5.6 3 23 301 321 299 321 0.96 6 13 7.5e-05 0.0087 17.5 6.0 1 23 327 350 327 350 0.94 7 13 2.6e-05 0.0031 18.9 0.5 1 20 356 375 356 377 0.95 8 13 0.0089 1 11.0 4.4 1 23 394 416 394 416 0.97 9 13 1.3e-06 0.00015 23.1 0.4 1 23 449 471 449 471 0.96 10 13 4.2e-06 0.00049 21.4 0.8 1 23 477 499 477 499 0.98 11 13 1.7e-05 0.0019 19.6 1.7 3 23 507 527 505 527 0.95 12 13 3.8e-07 4.4e-05 24.7 1.5 1 23 533 555 533 555 0.99 13 13 0.0003 0.035 15.6 0.8 1 23 560 583 560 583 0.95
Sequence Information
- Coding Sequence
- ATGATTACAGAATGTTCAAATTGTAGagtCGAAAGACATGATGATTATCCACATCAAATCTGTCTCAAATGTATTGAAGCTTTAAAATCTGCGtacatttttagattaaaatgtaaacaatCACATAAAATTGCTAAATTGGCTCTAAATAATGGCAAAGAACCTAGGATACCTAttattgataatgataatttacCCCCACTTGATAAATTTACCCAAACAGAAGCTTTATCATTTTTTCCATGTGAAAAATGTGATGAAAAGTTTataacaattgaaaaattaagaACCCATAGATATTATAATCATAAGGGAACCAGTCACGAGTGCAGAGTATGTAACAAATCATTTCGTAGAATAGGCTACCTTAAAAATCATTTAGCCTTCTATCATCCCGAATTAGGAcatgttaataataatgaatgtccaatctgttttaaaaaatttggccGAACAGAACATTTACGAAGACATCAAGTTAAAGTACACAATCAGAAATTTGGCAATCCAttgaacaatataaaaactgaactttccaaagaaaatatattaaatgatgaTACAATTAAAAAGCATGTTTGTCAAATGTGCTCAACAATATGCGAAACTGAAGATGAACTTACAAACCATTTTTGCAGGGAAAACTTTGAACAgTCCATAAAAtctgaagaaataaatattcatgTTAATCAAGAGaatcattttgaaaatgatgTTTTAGATTTACCTATTTCCGATGATCAATCCGACGAAGACGATTTAAAACCACTTTCTAAATTAAAAGAAGTATATGAATTTGAAAGAAAAGATGAATTAAATGCTACAAATAAAAgagaaatttcagaaaataaagaaaagctTAAAAGtggaacacaaaaaaaatctaaaatagaacatctttgtaatatttgtaaaaaaacgtTTACCCGAGCTGACCATTTACGACGACATGAACGTAGTCATCTTAATATAAAACCATATAATTGTATTCattgtaataaaactttttcacGATCAGATCATCTAAATAATCATATGACGAAATCTCATTCCGAAAAACAACCATTTAAATGTGAGAAATGTAATAAAGGTTTTCCACGAATGGAAAATTTACTAAGACATCAAAGCCAATGTTCTTCTGAGCAAGAACATAATCCAAAAGTTAAAAACccaaaatcatataaatgcgAAATTTGTCAAAAAGGTTTTACAACAGAACGTCACCATAGAGTTCATGTAAACAATCacagttcaaaaatattttcgtgtaaattttgtaaattggtaCATAAAACTAAAGCAGAATCTGTAGAACATTTAAAAACTCATGATAACCAGAAACCATTTCTTTGTTCAGAATGTGGATTACGATTTGTTCGTAATGATTATTTGATTGTTCATATGCGACGGCATAATGGGGAGAAACcgtataaatgtaaattttgcgATAAAGGTTTCCCGAGAGCTACAGATTTAACAGTGCACGAAAGatATCATACTGGGGAAAAAAGTCATTTGTGTGTAACATGCGGCAAAGGTTTTCATCGAGCTTACAATTTAGTTGTACATATGAGAGTTCATACAGGAGAACGTCCTTAcaaaTGTCCACATTGCTCAAAAAGTTTTGCACAAGGTAATGATTTAAAGGCTCATATACGTCGCCATACTGGTGAACGTTTTCGTTGTGAAATTTGTAACGAAGGTTTTATACAAGGATACCATTTAACGCAACATAAAAAAGCTGCTCATGGTATTGATCAACCATCTCACATACGACGACTAGAAAAAATCACACCTAATCGAACAGATCAGAAACAACAAATTGAAGAATTAATGAATCAAATAGTTGAAGGTGAAGAGATTAAAGATGAACCATCAAATTGTGTAAATACAATAGAAGATAAGGCAAATGATTATGCAAGTGTTACCTTTTTAGATACGAACAAGGGTATTAATATATCCGGTCCTATATTTTATACTACCAATATTGGTAATGAAACAGTAGTAAAATATGAAACTAATTTCGAATAA
- Protein Sequence
- MITECSNCRVERHDDYPHQICLKCIEALKSAYIFRLKCKQSHKIAKLALNNGKEPRIPIIDNDNLPPLDKFTQTEALSFFPCEKCDEKFITIEKLRTHRYYNHKGTSHECRVCNKSFRRIGYLKNHLAFYHPELGHVNNNECPICFKKFGRTEHLRRHQVKVHNQKFGNPLNNIKTELSKENILNDDTIKKHVCQMCSTICETEDELTNHFCRENFEQSIKSEEINIHVNQENHFENDVLDLPISDDQSDEDDLKPLSKLKEVYEFERKDELNATNKREISENKEKLKSGTQKKSKIEHLCNICKKTFTRADHLRRHERSHLNIKPYNCIHCNKTFSRSDHLNNHMTKSHSEKQPFKCEKCNKGFPRMENLLRHQSQCSSEQEHNPKVKNPKSYKCEICQKGFTTERHHRVHVNNHSSKIFSCKFCKLVHKTKAESVEHLKTHDNQKPFLCSECGLRFVRNDYLIVHMRRHNGEKPYKCKFCDKGFPRATDLTVHERYHTGEKSHLCVTCGKGFHRAYNLVVHMRVHTGERPYKCPHCSKSFAQGNDLKAHIRRHTGERFRCEICNEGFIQGYHLTQHKKAAHGIDQPSHIRRLEKITPNRTDQKQQIEELMNQIVEGEEIKDEPSNCVNTIEDKANDYASVTFLDTNKGINISGPIFYTTNIGNETVVKYETNFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -