Rlae018153.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:122892013-122893584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.023 16.2 0.1 3 23 188 208 187 208 0.97 2 12 9.4e-05 0.011 17.2 3.3 1 23 214 236 214 236 0.98 3 12 0.018 2.1 10.0 0.3 1 23 242 264 242 264 0.97 4 12 1.4e-06 0.00016 22.9 2.3 2 23 271 292 270 292 0.96 5 12 1.2e-06 0.00014 23.1 4.6 1 23 300 322 300 322 0.97 6 12 7.7e-06 0.0009 20.6 0.5 1 23 330 352 330 352 0.99 7 12 1.9e-05 0.0022 19.4 2.4 1 23 358 380 358 380 0.98 8 12 8.5e-05 0.0098 17.3 1.8 1 23 386 408 386 408 0.98 9 12 8.2e-05 0.0095 17.4 0.5 2 23 415 436 414 436 0.95 10 12 1.4e-06 0.00017 22.9 3.9 1 23 444 466 444 466 0.97 11 12 5.1e-05 0.006 18.0 0.4 1 23 472 494 472 494 0.97 12 12 5.3e-06 0.00061 21.1 2.1 1 23 500 523 500 523 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAAGTTTAGTAATGGTTGAAGTTGAACATATTAAAGTTGAACCATTTTCTGATTTATTACCAGACAATAATATATCTGATTCTGCAGCAAGTAGTAAAATAATTACTGAAAAATGTggtgaaattttaatatcaaaaaataaaaagatcttattatttaattgtaaatgttGTAATCAAGAATatgatttaatagaaaattttactaatcatattttcaatgaatatttaaaagaagaagaagatatattaaaaaatgattaccATTCAAAATGTAACGAAATTGTAAAAACTAATTCTTctgatattgaaattgaaactattaataaaaatgaagatgAGGAAATTTTAGGGAACATCCAAACCAAATTACAAAatgatacaaaacaaaataatccactagaagaagaagaaaaagaaagtAAGACAACTATTATAGATAGTAATGAACAAGTTCCAGTACAGCATCTTGAAATTAAGCTGAAGGAAATATCAagaaaacatttcaaattaagACGAAATCGTACAAATCGTATacgaattaaaacaaatatttgtgaaatttgtGATAAAGGATTTGGTAGTACAACAGCATTAAGTGATCATATGAATATTCATACTGGTGCCCGACCATATGAATGCAGTATATGTCCAAAAACATTTCGTTGCAATCAAAATCTGAAAGATCATGAGCGCCGTCATAAAGGTGAAGCAAATTTTCCGTGTAGTTTTTGTGATAAACGTCTTTATTCAAATGGTGAAAAAATTATACACGAACGTATACATACCGGACAAAAACCATGTGTATGTGATATTTGCGGCAGAGCATTCACTAGTCAATCAAcattaaaacaacataaatCAACACATTCAGCACAACGGGCTTTAGATTTTCATTGTAATGaatgtgataaatattttacatcaaaaacaaatttaacacggcacattaaattacattttggtATTGAAGAAACACACTATCAATGCCAgcaatgtgaaaaatattttggtagTTCAAGTGCACTGAAAgatcatataaatatacatacaggTGAACGGCCATATGTATGTAGTTATTGTTCAAAAGCATTTAAATCACGACAGACTTTAACAATGCATGAAAAACGTCATACCGGTGATGCTAAATATCCATGTGATTTATGCGAAAAACGTTTTTTTACATCAACTGAATTGGCTGTGCATCATCGTTATCATACTGGTGAGAAACCGTGTATTTGTGAATTATGtggtaaaagttttattaatgctGGTGCAATGAAtgcacataaaaaaaatcatgaagaATTAAAATCATATGATCATAAATGTGACCAATgtgaaaaaacatttacaagtaagaaaaatttaaaacggCATTTAGTTGTACATTGTGCAGAAAAACCATTTGCATGTGAAGAATGTCCAGCAAGATTTACACGCCGTGAAGGTCTGTCATCACATAAGAAAACCCATGCTGATATTAaggaatttaaatgtaaattttgtgagAAAGAATTTGCCCAAAGAAGTGTTTTATACCGACATATGAAAACGGTTCATTGA
- Protein Sequence
- MEESLVMVEVEHIKVEPFSDLLPDNNISDSAASSKIITEKCGEILISKNKKILLFNCKCCNQEYDLIENFTNHIFNEYLKEEEDILKNDYHSKCNEIVKTNSSDIEIETINKNEDEEILGNIQTKLQNDTKQNNPLEEEEKESKTTIIDSNEQVPVQHLEIKLKEISRKHFKLRRNRTNRIRIKTNICEICDKGFGSTTALSDHMNIHTGARPYECSICPKTFRCNQNLKDHERRHKGEANFPCSFCDKRLYSNGEKIIHERIHTGQKPCVCDICGRAFTSQSTLKQHKSTHSAQRALDFHCNECDKYFTSKTNLTRHIKLHFGIEETHYQCQQCEKYFGSSSALKDHINIHTGERPYVCSYCSKAFKSRQTLTMHEKRHTGDAKYPCDLCEKRFFTSTELAVHHRYHTGEKPCICELCGKSFINAGAMNAHKKNHEELKSYDHKCDQCEKTFTSKKNLKRHLVVHCAEKPFACEECPARFTRREGLSSHKKTHADIKEFKCKFCEKEFAQRSVLYRHMKTVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -