Rlae019065.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhamphomyia laevipes
Gene Symbol
-
Assembly
GCA_963920725.1
Location
OY987255.1:132972747-132979923[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.073 8.4 8.1 0.3 1 23 118 140 118 140 0.96
2 21 4.9 5.6e+02 2.4 0.7 1 23 174 196 174 196 0.86
3 21 3.5e-05 0.004 18.6 2.7 2 23 240 261 239 261 0.97
4 21 0.001 0.12 14.0 0.6 1 23 267 289 267 289 0.94
5 21 0.87 1e+02 4.7 0.3 1 13 295 307 295 311 0.83
6 21 0.33 38 6.0 2.5 1 23 510 533 510 533 0.96
7 21 4.5e-05 0.0052 18.2 2.3 1 23 793 815 793 815 0.99
8 21 0.00093 0.11 14.1 1.2 1 23 821 843 821 843 0.97
9 21 0.00052 0.06 14.9 0.3 3 23 851 871 849 871 0.98
10 21 0.03 3.4 9.3 3.1 1 23 878 900 878 900 0.98
11 21 0.00032 0.037 15.5 0.9 1 23 919 941 919 941 0.99
12 21 0.0057 0.66 11.6 1.2 1 23 976 998 976 998 0.95
13 21 1.6e-05 0.0019 19.6 1.6 1 23 1004 1026 1004 1026 0.99
14 21 0.056 6.5 8.4 2.4 1 23 1056 1078 1056 1078 0.99
15 21 0.00039 0.045 15.3 1.8 1 23 1084 1106 1084 1106 0.98
16 21 8.7e-07 0.0001 23.6 0.8 1 23 1112 1134 1112 1134 0.99
17 21 0.00049 0.057 14.9 4.6 1 23 1140 1162 1140 1162 0.98
18 21 4.1e-06 0.00048 21.5 0.3 2 23 1181 1202 1180 1202 0.97
19 21 0.024 2.8 9.6 3.0 1 23 1208 1230 1208 1230 0.98
20 21 9.8e-08 1.1e-05 26.6 1.7 1 23 1236 1258 1236 1258 0.99
21 21 8.5 9.9e+02 1.6 2.3 1 8 1268 1275 1268 1276 0.91

Sequence Information

Coding Sequence
ATGGATGCAACGAATTTGATCAATCAGTTAGCAAACTGTAAAATTTGGAGAGCTATTCCACGAATCAGAATATTGTCCACCGAATCAAATGCTTATTCAGaaactaCTCTCTGTTATGAcgaaaaattactatttaaaaatgacaaaaCTATTCACAATCCTGAAATTTCCAAAAAactagttaataataataataccactaaattattgtcttctaattctgatgataataatgttgataatataaataataatacccAAAAGACATTTACAAGCTTAAGAGCAGAaggttgtttttataaaaaagatgaaaatataataaaattaaaaaatattgatgataataGAAAGTTTCAATGTAACTTGTGTCCTACAAAATTTTGGACATTTGATCAATTATCATTAcatgaaattattcataattttaaacaaataaagccaaatttaaaatcttcaataaaacaacataaaattcaatttggaaAATACCAACAATCTGCTGATAAAAATCCAAATCGTTTTAAGTGCCCAGAATGTTTATCATCATTTTGGTCAATTCaacaatttgaattacataaaactagtcataataatttaattgataataataatagtaaagtaaaacatagaaatatatCACTTGATGAATTAATGATTGGACAACCaattgaagaattttataataaaatattagaaaaaaataaagcaaataaaCAACAATGTGATACTTGTGGTATGTGTTTTTCATCGGTAACATCATTAAAAAGACATATTATGAAACATACTGGGGAGAGACcgtataaatgtgAACATTGTTCACGAGGTTTTATTCGTCGGCAGGCATTACTATTGCATTTGGGTGCACATTCTGGCAAAAAGCAATACAAATGTGAACAATGTGATAaagtttCAATGTCTTCGGAAAATAAATCGAAACGCGCACGTTACTGTGTTGCACCGGGATGTAAAAATTTTGAGTGTGCTCTTAAAAAAGTTAATGATAgtgatgataaaaaaaatcaagacgAAACAACTATAACATATCACAATTTTCCAACAAAAGCAAGCTTAAGAAATAAATGGTTTAAATTTGTTGGCCATAAAAAAAGTGTAAGCAGTTTAACATGGCGTACATGGACACTTTGCtcagaacattttgaaaattctgaaTTTGAAGAAAGCTGTCATTTAGAATGTATTGATGGTGTATATAGacgtttaaatataaaacttaaaaatggtGCCGTGCCAACAAAATCTATGCCATCAACAGCACCAACGCCACCACCAACAACAACAGATGATCTACATAAACAAACTGAAGAAACAACAAATTCTATTGATTTTACAACAATAACGAACACGACAACAACAGATTCAAAAGAatctaataatattacaaattcatatgttaaaaatgaatatagtgaaattgattttgataatgaaacaatttatacagaaattgaagaagattttcattcaaaatgtgGTGAAGTATTTGTAACACGTAatggaacatttttatatttttgtacattttgtaatgagaatttagaaaattcagaaaaatttataacacaTATTCATAAAGAACATTTATCATTAGATTATgaaacagaaattaataatacaaatttttctactaatgatataataaaaaataataatgaaacaattaaattacCACAAGGTGCAACAACAGTAAATACTATAAAAGTACCATTGCCATTACAACATtgtgaaattgttgaaaatgaAGCTGGTAATTTTGAAACTATAAGtttttttgatgatgatgatgatgatgataatacaaataatgagagtacaattaatcaaaatttatatgctgAAATACAAGCTAAGAAAACAACTACAGAAGAATTTAAAgaacctaaaattaaatttgaaaattactgTACAACAAAACCATCATTACAAGAACAAACATCACAGAATAATGATTATGAAGTATTTATTGATTTGactgatgatgataatattgatgTTAATAATGAAGATGATagaattccaattaaaaatgaaGCTGTTTTTGATACAATTAATCCTACTACTGTAGATATTATACCAATTTCTAAAATGGATACTTCTGATAAATCGACATTCTCTGATAgtgtaataaataatgatatttgtACTAATAATAGTAATACTTTGTTAGTTGATAATCAAGattcagattatttaaaaattaatgaaataccaaATAACATTAAAGATAATCAGTATAAAGAAGATATATTACCAGCTGCTTATAATGATAAAGAATATGTAGAAGCAGATGATGATGATCTTATTGGCAATGGGAATGATGAAGAAGATGATGATTGGGATCCAATTAATCGTAAACGTTTTAAATGCAAATATtgtccaaaaatattaaaatcacaatttagtTTAACTGTACATACACGTAGCCATACTGGTGAAAGaccatttaaatgtaatatatgtTCGCGAAGTTTTAAATCGCAgggtattttatataatcatgaGAAAATTCATACTGATGTTAAACCATTTGGATGCACTATATGTGGATTGTatttatcaacacaatatagtttaaatattcatataaaacgTCATGAAACGCAACCGAATCAATACAAATGTGCTTATTGCGATAAAAGGTTTCTGCGCTTAAAGAAAAAGGTTCTTCATCAGCGTAcacataatattgatattaaacatGATCCagatgaagaaattaatttattaacgaaaaattttaaatgtgaattCTGTTTAAAAGTATTAAGTTCACAATATTCATTAATTGAACATCGACGTATACATACTGGTGAAAAACCATTTCCATGTAAATTTTGTCCATCAGCTTTTCGTtcgaaactattaaaaatatgtcaTGAACGTAGTAATCATACTGGTGAACGACCATTTAGTTGTATATATTGTGataaagCATTTGTAACAAAAAGTACTCGCGACAATCATGAACGTACTCATACAAATGAGAGACCATTTAAATGTGATTTATGCGATAAAACATATCGTCAAGCAAGTGCAAAAAATATGCATATGAAAACACATTTTCGACCAAacagagaaaataaaaataatataaatataactaattcAGCTGGTGGTTCTTCTGTTCAAGgtgataatacaaaaatttatcaatgtgaattttgtcaaaaaatattatcaacacAATGTATTTTAAATGACCATCGTCGTATACATACTGGTGAAAAACCATTTAGATGTAATCAATGCCCAATGCAATTTCGggtaaaatcattattattttatcatttacaaaGTCATACTGGTGAAAAAGCGTATGAGTGTAAATATTGCCAAAAAAgaTTTCGTTTTGCTGGTAATCTGATTGTTCATCTTCGTATTCATACTGGCGAAAAACCATTTCGATGTAGTTATTGTGATAAATGCTTTCGTCAGAAACAAGGTCAATTGGCACACGAAAAAACCCATATACCAggttataaaaaagaatatgtAGAAAAAGAAAAGGAAAATCGTATATGGAAATGTGATATTtgtggaaaaatattaataagtaaatatacATTAACAAACCATATACGTACACATACTGGTGAACGTCCATTTAAATGTACATATTGTCCATCAGCATTTAAATCATTATCACAACATACACAACATGAAAGAATACATTCTGGACTGAAACCATTTAAATGTAGTGAATGTgataaagcattTACAACGAAAAGTCAAATGAATGCCCATTTACGGAGACATGCAGCTaggaaattaagaaaaactgtTCATAAATGTGATCATTGTGGCAAAggtaaaatagaattttgttag
Protein Sequence
MDATNLINQLANCKIWRAIPRIRILSTESNAYSETTLCYDEKLLFKNDKTIHNPEISKKLVNNNNTTKLLSSNSDDNNVDNINNNTQKTFTSLRAEGCFYKKDENIIKLKNIDDNRKFQCNLCPTKFWTFDQLSLHEIIHNFKQIKPNLKSSIKQHKIQFGKYQQSADKNPNRFKCPECLSSFWSIQQFELHKTSHNNLIDNNNSKVKHRNISLDELMIGQPIEEFYNKILEKNKANKQQCDTCGMCFSSVTSLKRHIMKHTGERPYKCEHCSRGFIRRQALLLHLGAHSGKKQYKCEQCDKVSMSSENKSKRARYCVAPGCKNFECALKKVNDSDDKKNQDETTITYHNFPTKASLRNKWFKFVGHKKSVSSLTWRTWTLCSEHFENSEFEESCHLECIDGVYRRLNIKLKNGAVPTKSMPSTAPTPPPTTTDDLHKQTEETTNSIDFTTITNTTTTDSKESNNITNSYVKNEYSEIDFDNETIYTEIEEDFHSKCGEVFVTRNGTFLYFCTFCNENLENSEKFITHIHKEHLSLDYETEINNTNFSTNDIIKNNNETIKLPQGATTVNTIKVPLPLQHCEIVENEAGNFETISFFDDDDDDDNTNNESTINQNLYAEIQAKKTTTEEFKEPKIKFENYCTTKPSLQEQTSQNNDYEVFIDLTDDDNIDVNNEDDRIPIKNEAVFDTINPTTVDIIPISKMDTSDKSTFSDSVINNDICTNNSNTLLVDNQDSDYLKINEIPNNIKDNQYKEDILPAAYNDKEYVEADDDDLIGNGNDEEDDDWDPINRKRFKCKYCPKILKSQFSLTVHTRSHTGERPFKCNICSRSFKSQGILYNHEKIHTDVKPFGCTICGLYLSTQYSLNIHIKRHETQPNQYKCAYCDKRFLRLKKKVLHQRTHNIDIKHDPDEEINLLTKNFKCEFCLKVLSSQYSLIEHRRIHTGEKPFPCKFCPSAFRSKLLKICHERSNHTGERPFSCIYCDKAFVTKSTRDNHERTHTNERPFKCDLCDKTYRQASAKNMHMKTHFRPNRENKNNINITNSAGGSSVQGDNTKIYQCEFCQKILSTQCILNDHRRIHTGEKPFRCNQCPMQFRVKSLLFYHLQSHTGEKAYECKYCQKRFRFAGNLIVHLRIHTGEKPFRCSYCDKCFRQKQGQLAHEKTHIPGYKKEYVEKEKENRIWKCDICGKILISKYTLTNHIRTHTGERPFKCTYCPSAFKSLSQHTQHERIHSGLKPFKCSECDKAFTTKSQMNAHLRRHAARKLRKTVHKCDHCGKGKIEFC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01297521;
90% Identity
iTF_01297521;
80% Identity
iTF_01297521;