Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987255.1:122894723-122902486[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.2e-05 0.006 18.0 2.3 1 23 253 275 253 275 0.97

2 14 2.7e-07 3.1e-05 25.2 0.9 1 23 283 305 283 305 0.97

3 14 8.7e-05 0.01 17.3 0.3 1 23 313 335 313 335 0.99

4 14 0.002 0.23 13.0 2.2 1 23 341 363 341 363 0.98

5 14 0.18 21 6.8 3.9 1 21 369 389 369 391 0.92

6 14 2.2e-06 0.00026 22.3 0.2 1 23 397 419 397 419 0.97

7 14 2.9e-07 3.4e-05 25.1 2.5 1 23 427 449 427 449 0.99

8 14 1.4e-06 0.00016 22.9 0.8 1 23 455 477 455 477 0.99

9 14 0.092 11 7.8 0.4 1 23 483 505 483 505 0.96

10 14 0.001 0.12 13.9 0.9 1 23 511 533 511 533 0.93

11 14 0.00015 0.018 16.5 0.6 1 23 539 561 539 561 0.97

12 14 8.1e-05 0.0094 17.4 1.4 1 23 567 589 567 589 0.97

13 14 0.011 1.3 10.6 0.2 1 23 595 617 595 617 0.99

14 14 2.8e-05 0.0032 18.9 1.6 1 23 623 646 623 646 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.2e-05	0.006	18.0	2.3	1	23	253	275	253	275	0.97
2	14	2.7e-07	3.1e-05	25.2	0.9	1	23	283	305	283	305	0.97
3	14	8.7e-05	0.01	17.3	0.3	1	23	313	335	313	335	0.99
4	14	0.002	0.23	13.0	2.2	1	23	341	363	341	363	0.98
5	14	0.18	21	6.8	3.9	1	21	369	389	369	391	0.92
6	14	2.2e-06	0.00026	22.3	0.2	1	23	397	419	397	419	0.97
7	14	2.9e-07	3.4e-05	25.1	2.5	1	23	427	449	427	449	0.99
8	14	1.4e-06	0.00016	22.9	0.8	1	23	455	477	455	477	0.99
9	14	0.092	11	7.8	0.4	1	23	483	505	483	505	0.96
10	14	0.001	0.12	13.9	0.9	1	23	511	533	511	533	0.93
11	14	0.00015	0.018	16.5	0.6	1	23	539	561	539	561	0.97
12	14	8.1e-05	0.0094	17.4	1.4	1	23	567	589	567	589	0.97
13	14	0.011	1.3	10.6	0.2	1	23	595	617	595	617	0.99
14	14	2.8e-05	0.0032	18.9	1.6	1	23	623	646	623	646	0.97

Sequence Information

Coding Sequence: ATGGGTGAAGAGGACGACTCCGAAGATGAAAGATGGAAGATGTTATTACGAAAACCAAGATCAGCAACAACTGCAGCTAGGAAATTGTTTAGCGAAGGACAAATTGTGATCCCAGATGAAAATTGGAATGACGAAAATTATGTGAATGATGATGACAACAAGAACATCAAAAAAGTTTTAGCAGACTTTACCAATATGGTAAAGTCTATAAATCAATCAAAGGCAGGCAGTTCATCTACATCTGTGGCAAACTATAAGGGTCTAAAAACCCTTAACACAGGAATTCGTTTTAacaTCAAAAAGCTGTTAACAGAGCCACCAGCATTCAAGAGAAGTGATGACAGTATTGTCATCCTAAGCGATGGATTTTACACGTATATGCCACCTAGTACAAATGAGGATGAAataccattaaatattttaaaaaataaatcaaaaatctcaataaattcagaaaatattattgatctTCCTCAAACGGAATTAAATGCTGTTTCTGATAGTagtgataattttgaaagtattgtAAATACGGAAAGTTcacttaaatataaatcttatgATTTAATACATACCACAACAGCTGATCTAAAAAATCATTCCATCAGCACCACTGATGGTTCAACATATGAATACTCTAAATACCCGGTGACAGTTCCATCTAAACAAAGTTTGCTGATGCTGGAACACCAACACAATAATAATGAACTATGTAACCAATCTGAAGAATCCGAATCCAAtcataaagataaattatttatttgtgatgAATGCGGACACagttttacaaataattcaattttaaagaaaCATAAACTTACGCATTTCGAAAATTGTCAATTAAAGTTTATCTGCGATATTTgtgaaaaacaatttacaaataaaaagaatCTAATACGTCatcaaaatatacattttaatactGGTATCACACCATATAAATGTGTCGAatgtaataaattcttaagTAGTGCCGGTACATTAAAAgatcatttaaatatacataatggTTTACGaccatataaatgtaataaatgtgCTGCATCATTTCCAAGTAAACAAGCATGGAAACATCATGAAAAACGACATATTGGTATTGCTAAATATAATTGTGATtattgtgaaaaaatattttttacatcaaCCGAGAAAAAAATTCATGAACGTTGTCATACCGGCGaaaaaccatatttttgtgAGTTATGtggtaaaagttttattaattcggGTGCTTTAAATGCCCATAAAATAACACATGATGAAATTAAGTCATATGATTATAAATGTGAACTAtgtgagaaaatatttacaagtaagaaaaatttaaaacgtCATCAGGATACACATAAATTAGAGAAaccatataaatgtaaaatatgtgGTAAAGGTTTAAGTGGTTcatcaacattaaaatatcatatgAATACACATTTAGgtgaaaaaccatttaaatgtaCATTTTGTAATTCAGCATTTCCAAGTTTACAAGGTTGGAAAATGCATGAAGCACGACATCGAGGTGATGCTAAATTTCCATgtgatatttgtaataaaagatttttttcacCAAGCGAAAAACGTAatcatgaaatatttcattcaaatgaACGACCATTTAAATGTGAAATATGCGAAAAATGTTTTCCATCACAAGCAATACTAAAAgaacatattttattacataataatgatCGGCCATTTAAATGTATAGAATGTGATAAGAATTTTCAAAcgttaaagaatttaaaaagacATCAAATTATACATCGTAGTGATAAACCGTATCAATGTGAATTGTGTTCTTCAGCATTCTTACGAAAAGAAGGTTTAATATCTCATTTGAAAATACATTCCGACATAAAAGAATATCAATGTAAATTATGTGAAAAGGAATTTTCACAACGTAATGCCTGGTATAGACATATGAAAAATATGCATaagaataattgtaataataattatacttcaatagaaaatgtaaaaactttGTCGtga
Protein Sequence: MGEEDDSEDERWKMLLRKPRSATTAARKLFSEGQIVIPDENWNDENYVNDDDNKNIKKVLADFTNMVKSINQSKAGSSSTSVANYKGLKTLNTGIRFNIKKLLTEPPAFKRSDDSIVILSDGFYTYMPPSTNEDEIPLNILKNKSKISINSENIIDLPQTELNAVSDSSDNFESIVNTESSLKYKSYDLIHTTTADLKNHSISTTDGSTYEYSKYPVTVPSKQSLLMLEHQHNNNELCNQSEESESNHKDKLFICDECGHSFTNNSILKKHKLTHFENCQLKFICDICEKQFTNKKNLIRHQNIHFNTGITPYKCVECNKFLSSAGTLKDHLNIHNGLRPYKCNKCAASFPSKQAWKHHEKRHIGIAKYNCDYCEKIFFTSTEKKIHERCHTGEKPYFCELCGKSFINSGALNAHKITHDEIKSYDYKCELCEKIFTSKKNLKRHQDTHKLEKPYKCKICGKGLSGSSTLKYHMNTHLGEKPFKCTFCNSAFPSLQGWKMHEARHRGDAKFPCDICNKRFFSPSEKRNHEIFHSNERPFKCEICEKCFPSQAILKEHILLHNNDRPFKCIECDKNFQTLKNLKRHQIIHRSDKPYQCELCSSAFLRKEGLISHLKIHSDIKEYQCKLCEKEFSQRNAWYRHMKNMHKNNCNNNYTSIENVKTLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -