Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987255.1:142700808-142712298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.004 0.46 12.1 1.0 1 23 293 316 293 316 0.96

2 30 0.00017 0.019 16.4 1.1 2 23 321 343 320 343 0.97

3 30 0.023 2.7 9.7 4.3 1 23 382 405 382 405 0.95

4 30 4.4e-05 0.0052 18.2 1.2 1 23 413 435 413 435 0.98

5 30 0.00045 0.052 15.1 1.3 1 23 442 464 442 464 0.99

6 30 0.052 6 8.6 0.3 1 23 470 493 470 493 0.95

7 30 0.00016 0.019 16.4 0.8 1 23 499 522 499 522 0.98

8 30 0.0088 1 11.0 8.8 1 23 531 553 531 553 0.97

9 30 0.0013 0.16 13.6 1.1 1 23 704 727 704 727 0.97

10 30 0.0098 1.1 10.8 2.0 2 23 730 752 729 752 0.92

11 30 0.093 11 7.8 0.2 1 23 822 846 822 846 0.96

12 30 2e-05 0.0023 19.3 1.7 1 23 854 876 854 876 0.98

13 30 0.021 2.5 9.8 3.8 1 23 882 904 882 904 0.99

14 30 0.00014 0.016 16.7 0.8 1 23 910 933 910 933 0.97

15 30 2.9e-06 0.00033 22.0 1.2 1 23 939 962 939 962 0.97

16 30 0.00017 0.019 16.4 1.6 1 23 971 993 971 993 0.98

17 30 0.0017 0.2 13.2 1.8 1 23 999 1021 999 1021 0.97

18 30 5e-05 0.0058 18.1 0.2 1 23 1027 1049 1027 1049 0.98

19 30 0.0039 0.46 12.1 1.2 1 23 1234 1257 1234 1257 0.95

20 30 1.7e-05 0.002 19.5 2.7 1 23 1265 1287 1265 1287 0.98

21 30 0.0031 0.36 12.4 3.5 1 23 1293 1315 1293 1315 0.98

22 30 0.55 63 5.3 4.1 1 23 1321 1344 1321 1344 0.91

23 30 6.9e-07 8e-05 23.9 1.1 1 23 1350 1373 1350 1373 0.97

24 30 0.00028 0.033 15.7 3.2 1 23 1379 1401 1379 1401 0.98

25 30 0.052 6.1 8.6 3.7 1 23 1407 1429 1407 1429 0.98

26 30 0.017 1.9 10.1 3.2 1 23 1435 1458 1435 1458 0.87

27 30 0.00081 0.094 14.2 3.8 1 23 1464 1487 1464 1487 0.92

28 30 0.00014 0.017 16.6 1.8 1 23 1496 1518 1496 1518 0.98

29 30 0.00099 0.11 14.0 1.6 1 23 1524 1546 1524 1546 0.97

30 30 5e-05 0.0058 18.1 0.2 1 23 1552 1574 1552 1574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.004	0.46	12.1	1.0	1	23	293	316	293	316	0.96
2	30	0.00017	0.019	16.4	1.1	2	23	321	343	320	343	0.97
3	30	0.023	2.7	9.7	4.3	1	23	382	405	382	405	0.95
4	30	4.4e-05	0.0052	18.2	1.2	1	23	413	435	413	435	0.98
5	30	0.00045	0.052	15.1	1.3	1	23	442	464	442	464	0.99
6	30	0.052	6	8.6	0.3	1	23	470	493	470	493	0.95
7	30	0.00016	0.019	16.4	0.8	1	23	499	522	499	522	0.98
8	30	0.0088	1	11.0	8.8	1	23	531	553	531	553	0.97
9	30	0.0013	0.16	13.6	1.1	1	23	704	727	704	727	0.97
10	30	0.0098	1.1	10.8	2.0	2	23	730	752	729	752	0.92
11	30	0.093	11	7.8	0.2	1	23	822	846	822	846	0.96
12	30	2e-05	0.0023	19.3	1.7	1	23	854	876	854	876	0.98
13	30	0.021	2.5	9.8	3.8	1	23	882	904	882	904	0.99
14	30	0.00014	0.016	16.7	0.8	1	23	910	933	910	933	0.97
15	30	2.9e-06	0.00033	22.0	1.2	1	23	939	962	939	962	0.97
16	30	0.00017	0.019	16.4	1.6	1	23	971	993	971	993	0.98
17	30	0.0017	0.2	13.2	1.8	1	23	999	1021	999	1021	0.97
18	30	5e-05	0.0058	18.1	0.2	1	23	1027	1049	1027	1049	0.98
19	30	0.0039	0.46	12.1	1.2	1	23	1234	1257	1234	1257	0.95
20	30	1.7e-05	0.002	19.5	2.7	1	23	1265	1287	1265	1287	0.98
21	30	0.0031	0.36	12.4	3.5	1	23	1293	1315	1293	1315	0.98
22	30	0.55	63	5.3	4.1	1	23	1321	1344	1321	1344	0.91
23	30	6.9e-07	8e-05	23.9	1.1	1	23	1350	1373	1350	1373	0.97
24	30	0.00028	0.033	15.7	3.2	1	23	1379	1401	1379	1401	0.98
25	30	0.052	6.1	8.6	3.7	1	23	1407	1429	1407	1429	0.98
26	30	0.017	1.9	10.1	3.2	1	23	1435	1458	1435	1458	0.87
27	30	0.00081	0.094	14.2	3.8	1	23	1464	1487	1464	1487	0.92
28	30	0.00014	0.017	16.6	1.8	1	23	1496	1518	1496	1518	0.98
29	30	0.00099	0.11	14.0	1.6	1	23	1524	1546	1524	1546	0.97
30	30	5e-05	0.0058	18.1	0.2	1	23	1552	1574	1552	1574	0.98

Sequence Information

Coding Sequence: ATGTTAATGgcaacaaaacaTAAATGGAAAGATATACGTGATCGTTATGTACgtgaaaagaaaaaagaaaaaatgcgATCAAAACCACGATCATCATTATATCCACCATGGGAATGTATACCAAAATTACAATGGTTAGATGGACATTTACGAAATTATACATTTGCgacTCGTGCGCCTCGTGAACCTTCTAAAAAacgaaaatacaaaagaaaaactaaCAATAAAAAGAAACCAACAAGTACTGGTGACAATGCAGATTCTATAGATATTGATTATGAAATTGTAAATGATAATGTCAATaaagatgataataaatttgaatctaCACTTACATCAGCGGAAAATGAAGtttatgatattaaaactgAAGAAGTTgatccatttaaaattaaaatagctatggaaaataaatgtggacaattatatattgaaaatgaaaaattaatatttgtatgtgATTTTTGTGaaagtatattttatgaaagtaatattttcactgatcatatattaaattttcataaatatttaaatgacatCAAAAATGATGAATCAATATTAAGTTTGGAATGGCAAGATGAAATtgaatttttggATATAAATTCTAATGATGATATTGAAGAATATATCGATTATTcacctaataaaaaaaaattagagaaatCTGATGAATCATATGATGATAcacaatcatttaaaaataatgattatagtAATATAGAAGATGATTCAatagattcaaaaaaaaataatgaaaatgttgatgaaattgattgtaaatcaaataatttagattcagattttgaaaatgaaaacactgaaattaatatattcaatttaaaaagaccacaaaaaattaaaaatgctaatGGTGAATATTCATGTCCAATgtgtgataaaaaatatattttatataattcattaacaTTACATTTTCGTAATTTACatgctaatattaataaatgtgacCACTGTggtgaaatatttcaaagtgctatttcattaaaaacacatttaagaaaaattcatcgtgtatttaaaccaaaaattggACAAGAAGAAATTATTAGTGATATGAAAAAGCAACTTGGTAAAAATGAAATACCATTAGTACCACCACCAATACGTAATGATGATGATAgatttatatgtttaatatgtaaaaatagtTATTCACGTCATGAAACATTACGTAAACATCATATAAAAGTACATTTAAAAGGTGAACAACCAAAATACAGTTGTCAATATTGTGATAAACCATTTCAAACagaatattcattaaaaatccATAAGGCAACACATGATGATAATAAACgtttatataaatgtacaaaatGTGATGCTGATTTTGTACATCCAAAATTTTTAGGTGTACATTTACGTACACATTTAGGTAATCGTAAATATCCATGTGAATATTGTAAAGAAGCATTTCCAAAAcgtattgataaaatattacatgAACGTTCCAAACATACTAAAGAAAAACCATATCAATGTGAAGATTGTTATGAatcatttgtaaaatattcagaATTGGTTGTACATAGAAATCGTAAACATAATCCACATCGTAAACAACCAACACAtgtttgtaattattgtaataaaatatttcatcgaAAAGATACATATAATAATCATCTCCATAGACATGAAGGTTTAAGACCATTTCAATCCAAACGAAGATTTAGATCATTACGAGATCGTTATGTAcgtgaaaaaaagaaaatagatcAACAACTTTTAGTTACTGAAACAGTTAATTATCCAAATTGGCGATATTTTCCATTTCTGacttttttagataaatatttacgaaagaataaatCATTTGACGAATATAATGAAACGGAAGAAGATACATTAAGAGATGATGATACAATtagttattttgatataaattctaaaattgatgATCCACTTGGTGCacaaactttaaaatatgaaattgaatatttagatgagaataatagcaataataatattaatacaatattattagatTCAGAATATGATAGTCATGATAACAGCGAgcttaaaagtattaaaaaatgtcGTATTAATTATGACAAAccaccaaaattattaaatgaaagtaATGAATATCCATGTACATTATgtgaaaaaacatatacaatttataaatcattacGTGATCATTATCGCATTAATCATACAACAAAATgtgaatattgttttaaaagatTTGGTAATTTACATACATTAGAAATTCATTTATATGAACAACATTCTgatatgataaaacaaaataaatcaattaatttatataaaaaatcgattgatttaaatgaaaaattaattgatgaatttaatgaaaaatcatttaaatttaataatataaataatgatgaaaacgTATACGATAATTTAGTGAAACCACAAAAAAAGAAACAACCAGAAGATGAacccataaaaatgaaaaataatgaaggGCGATTTATATGTACTATATGTGATGATGTTACTTATGccagatttgaaaatattaaacggCATTATCGTGTTGTACACTTAGAAGTAGCAAAATCAAGATATTATTGCGATCAATGTGACAAAAATTATTACTCAAGATTTCAATTACGTGCCCATATGAATATTCATAAAGGTTTGAGACCATATAAATGTCATTTATGTTCTGCCGATTTTACACATccgcaatatttaaatttccatatacGGATACATTTAAATGATAAACGATATCCATGTACATATTGTGGTAAGAAATTTATTCGACCATATGAAAGAATTTATCATGAACGATCTAATCATACAAATGAAAAGCTATATCAATGTGATGATTGTGgtcaaacatttataaaaaattcacaattaaaaagtcataaaaatataaaacataatccAAATTATGTACGGCCGTTGTATGAATGcgatatatgtaaaaataaatttacgacAAAAGAATCTATGCAAAAACATAGATTAATACATGAAGGTAAAAAACCATTTGATTGTGATATATGTGGTAGTAAATTTCGTACACGACATGATGtaaatgtacataaaaaaatccattcggatattaaaaattatgtatgtaaaatATGTGACAAAAGATTTGCGCAGGGACCTGGTCTATATAGTCATATGAAATCACATGGAATTGCATTAAcTAAACGAAGATATAAATCATTAAGAGATCGTTATGTACGCGAAAAGAAGAAATTTGATGAACAACTTTTGATATCTAAAGCAGTTGATTATCCAACTTgggaatatttttctaatttaactttcttaaataaatatttacgtaAGAAATGtgatataaaagaaattaatgctCTAGGTCTAGATCATTCATCAATCAATCATGATTCTGATCAAGATTATAAAAAAGACATCAAACATCAACAGGatcaaaatacaataaataattcagctgaacacaaaattgaatatgaatataacaataatacagATTTAGAGAATATTAATTcatCTCATTTAAATGAAGAACATCCAGGTAATCAACATAAGTCAATTGAATTGAATGATGAGTTAATTGAATTGAATGAAAAATCgactgaatataataaaaatgatgaaattgaatatgatataaattttttaacaaaacaaccACAAAACGAAATTTCTGTACCGTTATTAGTTGATGAACCAGtaagaatgaaaaataatgaaggCCGATTTATATGTACATTATGTGATGTTACATATACAAGATATGAAAGTATTAGAAGACATTATCGAtttgtacatttatatatagCAAAATCTAAATACTATTGCAatcaatgtaataaaaattataatacaaaattttatttacgtgCCCATATGAATGTACATAAAGGTTTGAGACCTTTTAAATGTGATTTATGTAAAGCAGATTTTACAcatcgaaattatttaaaatctcatAGACTAATACATTTGGCTGAGAAACCACATCCATGTTCATATTGTGATAAACGATTTTTACGACATTATGAAAGAATGAATCATGAACGTGCTAGTCATACAAATGAAAGACCATACCAATGTGATGATTGTGGTGAAAGATTTGTCAGAAATTCACaattaaaacaacataaaattactaAACATGAAAACAATCCTAAATATTCTTGTGATCAATgtgataaaaaatatcattcaaGATTTCAATTACGTGCCCATCTGAATATTCATAAAGGTTTGAGACCATATAAATGTCATTTATGTTCTGCCGATTTTACACATCCGCAATATTTAAGTTTCCATATACGAATACATTTAAATGGTAAACGATATCCATGTACATATTgtggtaaaaaatttattcgatCGTATGAAAGAATTTGTCATGAACGATCTAACCATACAAATGAAAAGCTATATCAATGTGATGATTGTggtaaaagatttataaaaaattcacaattaacatgtcataaaaatttaaaacataatccAAATTATGTACGGCCGTTGTATGAATGcgatatatgtaaaaataaatttactagaaAAGAATCAATGCAAAAACATAGATTAATACATGAAGGTAAAAAACCATTTGATTGTGATATATGTGGTAGTAAATTTCGTACACAACATGATGTAAATGTACATAAGAAAATCCATtcggatattaaaaattatgtatgtaaaatATGTGACAAAAGATTTGCCCAAGGACCTGGTCTATATAGTCATATGAAATCGCATGGAATTGCATTAAGTTCAAAAAAAGATTCTGATGTCTTACTATAA
Protein Sequence: MLMATKHKWKDIRDRYVREKKKEKMRSKPRSSLYPPWECIPKLQWLDGHLRNYTFATRAPREPSKKRKYKRKTNNKKKPTSTGDNADSIDIDYEIVNDNVNKDDNKFESTLTSAENEVYDIKTEEVDPFKIKIAMENKCGQLYIENEKLIFVCDFCESIFYESNIFTDHILNFHKYLNDIKNDESILSLEWQDEIEFLDINSNDDIEEYIDYSPNKKKLEKSDESYDDTQSFKNNDYSNIEDDSIDSKKNNENVDEIDCKSNNLDSDFENENTEINIFNLKRPQKIKNANGEYSCPMCDKKYILYNSLTLHFRNLHANINKCDHCGEIFQSAISLKTHLRKIHRVFKPKIGQEEIISDMKKQLGKNEIPLVPPPIRNDDDRFICLICKNSYSRHETLRKHHIKVHLKGEQPKYSCQYCDKPFQTEYSLKIHKATHDDNKRLYKCTKCDADFVHPKFLGVHLRTHLGNRKYPCEYCKEAFPKRIDKILHERSKHTKEKPYQCEDCYESFVKYSELVVHRNRKHNPHRKQPTHVCNYCNKIFHRKDTYNNHLHRHEGLRPFQSKRRFRSLRDRYVREKKKIDQQLLVTETVNYPNWRYFPFLTFLDKYLRKNKSFDEYNETEEDTLRDDDTISYFDINSKIDDPLGAQTLKYEIEYLDENNSNNNINTILLDSEYDSHDNSELKSIKKCRINYDKPPKLLNESNEYPCTLCEKTYTIYKSLRDHYRINHTTKCEYCFKRFGNLHTLEIHLYEQHSDMIKQNKSINLYKKSIDLNEKLIDEFNEKSFKFNNINNDENVYDNLVKPQKKKQPEDEPIKMKNNEGRFICTICDDVTYARFENIKRHYRVVHLEVAKSRYYCDQCDKNYYSRFQLRAHMNIHKGLRPYKCHLCSADFTHPQYLNFHIRIHLNDKRYPCTYCGKKFIRPYERIYHERSNHTNEKLYQCDDCGQTFIKNSQLKSHKNIKHNPNYVRPLYECDICKNKFTTKESMQKHRLIHEGKKPFDCDICGSKFRTRHDVNVHKKIHSDIKNYVCKICDKRFAQGPGLYSHMKSHGIALTKRRYKSLRDRYVREKKKFDEQLLISKAVDYPTWEYFSNLTFLNKYLRKKCDIKEINALGLDHSSINHDSDQDYKKDIKHQQDQNTINNSAEHKIEYEYNNNTDLENINSSHLNEEHPGNQHKSIELNDELIELNEKSTEYNKNDEIEYDINFLTKQPQNEISVPLLVDEPVRMKNNEGRFICTLCDVTYTRYESIRRHYRFVHLYIAKSKYYCNQCNKNYNTKFYLRAHMNVHKGLRPFKCDLCKADFTHRNYLKSHRLIHLAEKPHPCSYCDKRFLRHYERMNHERASHTNERPYQCDDCGERFVRNSQLKQHKITKHENNPKYSCDQCDKKYHSRFQLRAHLNIHKGLRPYKCHLCSADFTHPQYLSFHIRIHLNGKRYPCTYCGKKFIRSYERICHERSNHTNEKLYQCDDCGKRFIKNSQLTCHKNLKHNPNYVRPLYECDICKNKFTRKESMQKHRLIHEGKKPFDCDICGSKFRTQHDVNVHKKIHSDIKNYVCKICDKRFAQGPGLYSHMKSHGIALSSKKDSDVLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -