Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987257.1:47921212-47927575[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00097 0.11 14.0 7.0 1 23 182 204 182 204 0.98

2 26 1.6e-05 0.0019 19.6 7.3 1 23 212 234 212 234 0.98

3 26 0.59 68 5.2 2.6 1 23 300 322 300 322 0.96

4 26 0.00016 0.019 16.4 1.4 1 23 327 349 327 349 0.96

5 26 0.017 2 10.1 4.9 1 23 355 377 355 377 0.98

6 26 0.00096 0.11 14.0 0.3 2 23 403 424 402 424 0.97

7 26 0.00074 0.086 14.4 1.6 1 23 505 528 505 528 0.97

8 26 0.21 25 6.6 0.1 2 22 536 556 536 556 0.95

9 26 0.37 43 5.9 0.8 1 23 565 587 565 588 0.95

10 26 3.1e-07 3.6e-05 25.0 2.5 2 23 608 629 607 629 0.97

11 26 1.1e-07 1.3e-05 26.4 2.9 1 23 636 658 636 658 0.98

12 26 1.2e-05 0.0014 20.0 1.5 2 23 673 694 672 694 0.95

13 26 3.7e-07 4.3e-05 24.8 2.0 1 23 700 722 700 722 0.99

14 26 2e-06 0.00023 22.5 2.9 3 23 730 750 728 750 0.96

15 26 4.2e-07 4.9e-05 24.6 1.3 1 23 756 778 756 778 0.99

16 26 0.00068 0.078 14.5 0.1 1 23 784 808 784 808 0.91

17 26 0.00036 0.042 15.4 5.8 1 23 977 999 977 999 0.98

18 26 0.00013 0.015 16.7 4.4 1 23 1007 1029 1007 1029 0.98

19 26 1.7 2e+02 3.8 4.5 1 23 1096 1118 1096 1118 0.95

20 26 0.0083 0.96 11.1 1.9 1 23 1189 1212 1189 1212 0.96

21 26 0.029 3.4 9.4 0.1 2 22 1220 1240 1220 1240 0.95

22 26 0.037 4.3 9.0 1.5 1 23 1249 1271 1249 1272 0.96

23 26 0.068 7.9 8.2 3.7 1 23 1292 1311 1292 1311 0.82

24 26 9.6e-06 0.0011 20.3 1.4 1 23 1317 1339 1317 1339 0.99

25 26 9e-06 0.001 20.4 1.2 1 23 1353 1375 1353 1375 0.95

26 26 4.6e-07 5.3e-05 24.5 1.2 1 23 1381 1403 1381 1403 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00097	0.11	14.0	7.0	1	23	182	204	182	204	0.98
2	26	1.6e-05	0.0019	19.6	7.3	1	23	212	234	212	234	0.98
3	26	0.59	68	5.2	2.6	1	23	300	322	300	322	0.96
4	26	0.00016	0.019	16.4	1.4	1	23	327	349	327	349	0.96
5	26	0.017	2	10.1	4.9	1	23	355	377	355	377	0.98
6	26	0.00096	0.11	14.0	0.3	2	23	403	424	402	424	0.97
7	26	0.00074	0.086	14.4	1.6	1	23	505	528	505	528	0.97
8	26	0.21	25	6.6	0.1	2	22	536	556	536	556	0.95
9	26	0.37	43	5.9	0.8	1	23	565	587	565	588	0.95
10	26	3.1e-07	3.6e-05	25.0	2.5	2	23	608	629	607	629	0.97
11	26	1.1e-07	1.3e-05	26.4	2.9	1	23	636	658	636	658	0.98
12	26	1.2e-05	0.0014	20.0	1.5	2	23	673	694	672	694	0.95
13	26	3.7e-07	4.3e-05	24.8	2.0	1	23	700	722	700	722	0.99
14	26	2e-06	0.00023	22.5	2.9	3	23	730	750	728	750	0.96
15	26	4.2e-07	4.9e-05	24.6	1.3	1	23	756	778	756	778	0.99
16	26	0.00068	0.078	14.5	0.1	1	23	784	808	784	808	0.91
17	26	0.00036	0.042	15.4	5.8	1	23	977	999	977	999	0.98
18	26	0.00013	0.015	16.7	4.4	1	23	1007	1029	1007	1029	0.98
19	26	1.7	2e+02	3.8	4.5	1	23	1096	1118	1096	1118	0.95
20	26	0.0083	0.96	11.1	1.9	1	23	1189	1212	1189	1212	0.96
21	26	0.029	3.4	9.4	0.1	2	22	1220	1240	1220	1240	0.95
22	26	0.037	4.3	9.0	1.5	1	23	1249	1271	1249	1272	0.96
23	26	0.068	7.9	8.2	3.7	1	23	1292	1311	1292	1311	0.82
24	26	9.6e-06	0.0011	20.3	1.4	1	23	1317	1339	1317	1339	0.99
25	26	9e-06	0.001	20.4	1.2	1	23	1353	1375	1353	1375	0.95
26	26	4.6e-07	5.3e-05	24.5	1.2	1	23	1381	1403	1381	1403	0.99

Sequence Information

Coding Sequence: atgtcgaaaaaagaaatattagaaaatttaaatgttgaaataaCATGCCGTTCATGTCTAGTGGAATCTGACCAATTAACTTCGCTTTTTGCTGTTGCAAATAATAATGAACTATCTTTTGGTGATATTCTAGCTAATATATcacataacaaaattaatctttataataaaattaatttgccaACAAAAATATGCGATTTATGCCAACAAGATTTATTGCTAGcctacaattttaaaataaaaactgaaaaaagtgaaaatattctgcgtgaatatttaaaaaatataaatgcaaatatCGAAGAAATAACGGTTCCAGTAGAAACTGATTATGgttttatcaatataaaatctGAACAAAATTTCGAGAATGAATTGGTCACTGAAAAAAGTGAAGAAGAGGATGATAATGATGCTGTCGGCGAATATGTCGACTATGAAAAccaaagttttgaaaaatttaacaatgaTGAGAATGACGACTATGATGAAGATCAAGCTGAAGAAAAAATCCCATTAGCACCACGAATTGGTCAAGGAAAATTTCATTGTCATTTATGCAAATCTAAATTTTCAacacaaaatcaattaaacaaTCACatgaaaattcatgaaaatggtgttggtaataaattttactgtaCGACCTGCGATAAGTGTTTTGCAACAAATCGGAATTTACACAGGCATATGAAATTACATTTGAAAGAACAATTaacaaatcaaatgaaaattgaCAAGTTTTTTACGCCACAACTTGACCCTATGGAAACTGATATACAATATGATGTTCCCGATACTGATCCAAACCaggaagaagaaaataaagatgacattaaattagatttaagaatttttaaaccAGAAACAAAATTGAAACCTGGTATTGATAGGAATTATCCGTGTCAATTTTGTTCTTCTagattttcaaatcaaatacaGTTGGATTGTCATATGAAAGCACATTCTGCTAAAAAATTCTTCTGTGAGGCTTGTGACCGCTATTTTGTTAATAATCGTAACTTGCAAAGACATTTAAAATTGCATTATGGTCCAAGTGAATTTAAATGCTCTCATTGTACTAAAACATTTGAATCGAAATTACGTTGGAAACTCCATGAGCGAAGTCATTTggTTAAGGAATCTGATATCTCAGGttatgattttgataaaaacaGTTGTATGCCAAACGAGATAAAAACATtagaatgtaaaatttgtaatgtcgcatttacaaaaatttttcttttacgaGAACATTTACAGACACATACAAATTTAGAGacaattgatattgaaaatataagaaaaagtaattatctaataaatctTGTACCAGATGGTGGGTCCGATTTAAGCAAAGTAATTGATTATATTGTTACCGAGCTTCAAGAAGgacgaaatgaaaaattttattcggCAACAAATATGGTTGGCAATGAATTAAGATTAAGTGATTCTGAAACTGATACCGATTCTGAGGATAGTAAAAATTTGCTACCAGTTAATTTATATGTCTGCCAAATATGTGAGCAAACATTTACGCGtcgttacaaaattttatatcatcagCGAAATGATCATACAGCTGAAGAATTGGGAAATGAATGTGGAATTTGCGAAATGAAATATGCATCGAAAAATCTGTTAGATTATCATATTAAAACGCAGTGCGGAAATATTGAGAAGCATTTCACTTGTGatgtttgtaaaataaaatatatgtggaAAGAGAATATTGAACAACATATTCAAATACAtcatataaaatcaaaacaaccaattaaattaataggaaaatatacaactgataaaaaattagaatgtGATATTTGTCAGAAAAAGTTTTCACGACCAGAACATTTAAGTCGACATCAGCGAACCCATAATCCAGATGAGAAAAAGTTTGAATgtgaaaaatgtcaaaaaaaatttagtcgCAAAGATAATTTGAAATCACATATGAAAGTTCATGATGAAAATCATAATGATCCATCGGAAGAAAGTAAATCTTTTTTATGTGTATTTTGTGGTAGAAAATTTCGTAATTCTTCTAATTTGGTTGTACATACACGTCGTCATACTGgtgaaaaaccatttaaatgtgACTTTTGTGATAAAGGATTTCCAAGATCATCAGATCTAAGAACACATCGAAGGACACACACTGGAGAGAAACCCCATCTTTGTACATTATGTGGGAAAGGGTTTTCAAGATCAAAtaagcTAACAAGGCATATGCGTATTCATAGCGGTATTAGACCTTATAAATGTACATACTGTGATCGCGCATTTACACAATCCAATGATTTAACAATTCATGTAAGAAGACATACAGGTGAAAAACCTTATGTTTGTGGCATATGCGGAGAACGTTTTATACAGGGAACTGCTTTACAAAATCACCGAAAAAGTCGTGGTCATTTCGAAGAAGGAAATGTGAATGTACCATTTTCCTATATAAGTCAAAATAATCCAAATCCATTGAATAATAGTGGACGTGTTGATCGTATCGGAATGCCTAAAAATAATGCTACTGGTAATAATAGTGTTGTCGAACCACAGCCACTACAAAGATTTATGGGATTATCAGCACCAACTGCTACAAGTACATCTGGAACATATATAATTAGTGGACAAGAAGAAATTAtaggattaaattttaaaaatatagcaaGCTTCGTAAATGCCCAACAGTCTATGCATGAAGAAGAATCTAATGCATATGAAATACCGTCTACGGTGCCAGTAGAAAACAATTatggttttataaatataaaatctgaaCAAAGTTTTGACAATAAATTGGTCACTGAAAAGAGTGAAGAAGAGGAAGATATTAATGCTGACTGTGATGAAGATTATGGAGatgataaacaaatatttattaaaacgaaAGTATCATCATCACGTCACGGATACGGCAAATATCATTGTCATTTATGTAAATCTAGGTTTACTACACAATCTCTATTAAATAATCACATTAAAATTCATGATCGTGGGGAAGCTAATAAGTTTTATTGTTCCTCATGTGATAAGTGCTTTgtgggaaaaaaatatttgcaaagaCATATCAAACTTCATTTGAAAGAAAAGCCAACGAATCAAGTAAAACCTTCACGGGTTTCAAGTTCTAAAAATGATCCGATATGCACTGATGTACAATGTGAAAATTCTGATAATGAAATATATCCTCCAGATGAAATAACTAAGGATGATCTAAAGTTAGATATCAAAATCTTCAAACCGGAAACTAAATTAAGCTTTAATGTTCAAAAGAATTATGCTTGTCAACATTGTTCTTCCAGGTTTTCAAATCAACTTCAATTGGATTGTCATATGAAAGCACATTCAgctaagaaatttttttgtgaGGCTTGTGACCGTTATGGTGGGTCCGATTTAAGCAAAGTAATTGAATATATTGTTACCGAGCTTCAAGATGGTcggaatgaaaatttttattcagcAACAAATATGGTTGGAAATGAATTGAGATTAAGTGATTCTGAAACTGATACCGATTctgaaaatagtaaaaaagCGGTTCAAGATAAATGTTATTCTTGTGAATTATGTGAACAAACATTTACACGtcgttataaaattttatatcatcaaCAATATGATCATAAAGATGACGAATTGGAAAATGAATGTGGAATTTGTGAAATGAAATATGCatcgaaaaatttattaaattatcacattaaAACGCAGTGCGGCAATACCGAAAAACATTTCACCTGTGAAGTTTGTAAGATAAAATATATGTGGAAAGAAAATATTCAGCGACATATCCGAATACATCATAAAAATGAACAACAACAAAGTGTTAAACTTTTCCGACAGTTTACGCCTACTAAGAAATTTGAATGTGATATATGCAAGAAGACATTTACCCGTTTGGATAGACATCAACGTACACATAATTTGGAAAAGAAGTTCCAATGTGGAATTTGTCTTAAAAAATTTCGTCGAAAAGATACTATGCAAGTGCATATGAAAGTACACGGTGAATATTACGATTATGCATCGGAAGagagtaaattatatttgtgtgtATTTTGTGGTAGAAAATTTCGAAGCTCTTCAAATTTGGCAGTACATACACGCAGGCATACTGGCGAAAAACCTTATAAATGTGACTTTTGTGATAGAGCATTCCCAAGTTCATCAGATCTCAATACCCATCGTAGAACACACTCCGGAGAAAACTTGCTGAAAGTTAAAGGATAA
Protein Sequence: MSKKEILENLNVEITCRSCLVESDQLTSLFAVANNNELSFGDILANISHNKINLYNKINLPTKICDLCQQDLLLAYNFKIKTEKSENILREYLKNINANIEEITVPVETDYGFINIKSEQNFENELVTEKSEEEDDNDAVGEYVDYENQSFEKFNNDENDDYDEDQAEEKIPLAPRIGQGKFHCHLCKSKFSTQNQLNNHMKIHENGVGNKFYCTTCDKCFATNRNLHRHMKLHLKEQLTNQMKIDKFFTPQLDPMETDIQYDVPDTDPNQEEENKDDIKLDLRIFKPETKLKPGIDRNYPCQFCSSRFSNQIQLDCHMKAHSAKKFFCEACDRYFVNNRNLQRHLKLHYGPSEFKCSHCTKTFESKLRWKLHERSHLVKESDISGYDFDKNSCMPNEIKTLECKICNVAFTKIFLLREHLQTHTNLETIDIENIRKSNYLINLVPDGGSDLSKVIDYIVTELQEGRNEKFYSATNMVGNELRLSDSETDTDSEDSKNLLPVNLYVCQICEQTFTRRYKILYHQRNDHTAEELGNECGICEMKYASKNLLDYHIKTQCGNIEKHFTCDVCKIKYMWKENIEQHIQIHHIKSKQPIKLIGKYTTDKKLECDICQKKFSRPEHLSRHQRTHNPDEKKFECEKCQKKFSRKDNLKSHMKVHDENHNDPSEESKSFLCVFCGRKFRNSSNLVVHTRRHTGEKPFKCDFCDKGFPRSSDLRTHRRTHTGEKPHLCTLCGKGFSRSNKLTRHMRIHSGIRPYKCTYCDRAFTQSNDLTIHVRRHTGEKPYVCGICGERFIQGTALQNHRKSRGHFEEGNVNVPFSYISQNNPNPLNNSGRVDRIGMPKNNATGNNSVVEPQPLQRFMGLSAPTATSTSGTYIISGQEEIIGLNFKNIASFVNAQQSMHEEESNAYEIPSTVPVENNYGFINIKSEQSFDNKLVTEKSEEEEDINADCDEDYGDDKQIFIKTKVSSSRHGYGKYHCHLCKSRFTTQSLLNNHIKIHDRGEANKFYCSSCDKCFVGKKYLQRHIKLHLKEKPTNQVKPSRVSSSKNDPICTDVQCENSDNEIYPPDEITKDDLKLDIKIFKPETKLSFNVQKNYACQHCSSRFSNQLQLDCHMKAHSAKKFFCEACDRYGGSDLSKVIEYIVTELQDGRNENFYSATNMVGNELRLSDSETDTDSENSKKAVQDKCYSCELCEQTFTRRYKILYHQQYDHKDDELENECGICEMKYASKNLLNYHIKTQCGNTEKHFTCEVCKIKYMWKENIQRHIRIHHKNEQQQSVKLFRQFTPTKKFECDICKKTFTRLDRHQRTHNLEKKFQCGICLKKFRRKDTMQVHMKVHGEYYDYASEESKLYLCVFCGRKFRSSSNLAVHTRRHTGEKPYKCDFCDRAFPSSSDLNTHRRTHSGENLLKVKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -