Rlae025805.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987257.1:22450572-22452171[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.078 38 5.4 0.1 15 29 53 67 46 80 0.74 2 9 0.023 11 7.2 1.3 10 28 157 175 154 184 0.78 3 9 0.0059 2.9 9.0 4.0 3 30 179 208 177 219 0.81 4 9 0.0013 0.63 11.1 2.1 14 40 219 242 212 256 0.89 5 9 0.055 27 5.9 3.4 5 29 267 291 263 302 0.84 6 9 0.091 44 5.2 0.6 14 41 304 328 296 330 0.76 7 9 0.85 4.2e+02 2.1 2.6 6 28 325 346 320 359 0.76 8 9 0.11 54 5.0 0.2 12 29 359 376 348 385 0.78 9 9 0.0068 3.3 8.8 0.2 14 41 389 413 380 414 0.78
Sequence Information
- Coding Sequence
- atggataatttgCTAAAAATTGAagcaaataatatttgtattaaaaatgaaccaaatgaaataaatttgagtGATACAAATgatggtaaaattttaaatgctgCTGGTGATGATACAGTTTGTTGtggtgaaatttttgtaaaaaatttcgagAACTATTGGATTGTTTGTcgaatatgtaatatgaaatttgattcAACACGTATTTTTATTGATCACACAATTAAATCACATTTGGAGCCAACCTTAAAATTAACAAGTAATGCtgaaataaatacaaacaaTAACATCAATccagaattaaaatttgaaatagaaatagAAGAGTTTAAAGATTTCGAAAATCAGCAAATccatgataatgataatgatgaagaCGAATACGACGAGGATAATAAATCATCAAGTTCtgatgaaaataatgatgaaactattgaaaataatgatgacaacaaaacaaatataatatctaCAAAACGACATAAAAAGAATCAATGTGATTTATGTGATAAAGTTTTTGATAGACCGTGCAAACTGAAAAGACATATGGGTGTTCATGAGAAACAATTAAAGGAAAAATCATGGCAGTGTAGTATTTGTAATGAtatatttacaaagaaaaacTTATATCGAAATCATAGAGAAACATATCATAAGGAACGAGTTAAATGTGATTATTGTGACAAAACTTTTGgcaataaaagtaatttaaaggaacatattaatatGCATAAAGATGAACGTCCATTTCAATGTGATCAATGTCCaatgaattattattcaaaagcATCATTAACTTGTCACATTCGGAGAGTACACTTAAAGGATGCACCACATACTTGTCCACATTGTGGTAAAAAGTTTTTACGTAGCTGTGCTCTAACAATTCATATTCGGATACATAcaggAGAAAAACCATATGTTTGTGAAGTATGTGGTGCAAATTATCAAACATCATCATTATTAGCTAACCATATTAAAAGACATACTAATGATAGACGATATTCTTGCGAAATATGtggaaagaaattttttaataatacatatttaagaGATCATAAAATTTCCGTACATACACAAGAAAAACCATTTGCTTGTGACATTTGTGAAGCAAAATTTAGTGGAAAACCAGCATTGcggaaacataaaaaattacatttagatGTAAAGGAATATGTTTGTACGATTTGTGGTAAAGCATATGCACAAAGTCCTGGATTATATGCTCATATGAAATCTCATCAAATAGCTTCCGAAAAggcattaatttcataa
- Protein Sequence
- MDNLLKIEANNICIKNEPNEINLSDTNDGKILNAAGDDTVCCGEIFVKNFENYWIVCRICNMKFDSTRIFIDHTIKSHLEPTLKLTSNAEINTNNNINPELKFEIEIEEFKDFENQQIHDNDNDEDEYDEDNKSSSSDENNDETIENNDDNKTNIISTKRHKKNQCDLCDKVFDRPCKLKRHMGVHEKQLKEKSWQCSICNDIFTKKNLYRNHRETYHKERVKCDYCDKTFGNKSNLKEHINMHKDERPFQCDQCPMNYYSKASLTCHIRRVHLKDAPHTCPHCGKKFLRSCALTIHIRIHTGEKPYVCEVCGANYQTSSLLANHIKRHTNDRRYSCEICGKKFFNNTYLRDHKISVHTQEKPFACDICEAKFSGKPALRKHKKLHLDVKEYVCTICGKAYAQSPGLYAHMKSHQIASEKALIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297787;
- 90% Identity
- iTF_01297787;
- 80% Identity
- iTF_01297787;