Rlae034348.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987261.1:1817633-1820104[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-09 6.8e-06 26.7 0.0 4 42 9 49 6 51 0.84
Sequence Information
- Coding Sequence
- atgtcaaaaaaatatacaaaatcagaTATGATATCTGCTTTAACGGCAATTAAAGCAGATAAAAATCCTTTATCAATACGAGCTGCATCGAGGATATACAATATTCCCAGGCCTACTCTCCAGAATAGAATTCATGAAAGAACTAAAAAGTCAGGCCATGGCCCTTGTACCATTCTAACAAAAGAAGAGGagcaaaaaattgttaattggtTAGTGGTTAACCATACTAAAGGCTTTCCTCGTCGAAAACACGACGTACAGTGTGTGGTGAAAGATTTTTTGGTAGCATCGCCTAGAGAAAAcccatttaaaaataacttacctGGTGATACGTGGTATAATTCATTTCTTAGGCGCCACCCTGAGCTAGCAGTCAGAACGCCTGAAGCAATTACTGACGCCAGTTCTAAAGTATCTGAGGCAAACATTCGTAACTggtttaatcaaattaatacgTACCTAAGTGAGAAAAACTATTCTGAGATTTTGAACGATCCTACAAGAATTTTTAACGGAGATGAAACAAATTTCATGATGTGCCCGAAAGGTGGCAAAGTTCTAGCTCCAAGAGgtgcaaaaaatatatacgaaaCTGACCGAGGGCAAGCTAAGGAAAACGTTACAGTTATGTTTAGTTTTTCAGCTTCTGGTAATATGACTCCACCATTAGTTGTATTCCCATATAAGAGGATGCCATCAGATATTTTGCAGTCTATTCCAGAAGGAATAAAATGGCTTAAATCGGATTCGGGTTGGATGACGTCCGAAGTCTTTTACGATTATATAAAAGACATATTTTACCCAAGTATTATCGAGAACAAGATAGCGCTTCCAATTATTCTTTATGTAGATGGTCATAAGACACATCTTACTTATGCGCTATCGAAGCTTTGtgaagaattgaaaataatattaatatgtttatatCCTAATTCGACAAGAATATTACAGCCAGCTGACGTTTCTGTATTTAAGCCAGTAAAAACTGGTTGGCAAAGAGCAGTTCAAAATTGGAGAATTGTTAATGTAGGTAAAAAACTGTATAAAGTCAACTTTACTCCAAtacttaaaaatgttattgaaacCAGTGTTAAagagaaaaacataaaaaatggcTTTCGTGCATGTGGTCTTTTTCCTTTTGATGCTAATGCAATTGATTATTCTAAGTGCCTTGGAAAGAATTCAAGAGAATTTCATGATACAGGTGAACATGATTTAGTCAAAACTTTAACTTTTAAAGAATTCGCAGAATTTGCTggtgaaaataaaatagaagaGCTGAAACATTCTGATGAATATCTTAATACACATTCTGAAGATTTctcaattcttttaaaaatttacaaacgtTTAAGTGCTGGTGAAATTCAATATGaaGATATTCAAGgcgaagatttaaatttaaacgatgATCCCATTGAATTTGAAACAGAAGATATTGAGGACTTCAGCGAACCCAAATGTAGACAGAAACCTAAAGattctttaattaatgaaatacagaCCATTCCACTCGAAGATTGCGAAATTCAAAACTATGAAATAGTGGACGAAATTAATCAGAACTTAGTGCAAGATATACCAATAATCTTTTTAAACCAGTCAAGTATTGAGATAACAGATTTTCTTAGTGTTCCAGAAACACCTGTTCGAACAGGAAATAGAAACACTGAAAGACGTAGTTTTATAATATCTTCTACTCCATTCCAAAAAGCTGaggaaataaaaattgagaaaaagATTACTGCTGCtaatttaaaagaagaaaagttgaataaaagaattgaaaataagaaattaaaagagCAAAAGGCTAGAATTATTGCCCAGCGGAAGGTTGAGCGCatggaaataaaagaaaaaaagaaacagAAGATTAATAagagtaataaaaatgaaaatataaatatgagcAATAAGGAAAATAGCAACAGGTTCAACTTTTTATCTACTACTAACAGCTCAGAAACTGCAACTAACAACATTTTAACTGATATTTTAAGTGATACTGAtagtcatataaaaaataataatactaaggAAGCTCATGTACGTCAATTATTTGGTGAACCGCAACAAGTTGAACAAAAAAATCCATACGTTAATGATATTGAAGTTTCTGTCTGTAAAAAACGAAAATACCATATTAATTGTGCAATTAAAATGGACTCTGATAATAATAtggatgatttaaatttatttagttgcaaAGTTTGCATAGTAAGCTATtag
- Protein Sequence
- MSKKYTKSDMISALTAIKADKNPLSIRAASRIYNIPRPTLQNRIHERTKKSGHGPCTILTKEEEQKIVNWLVVNHTKGFPRRKHDVQCVVKDFLVASPRENPFKNNLPGDTWYNSFLRRHPELAVRTPEAITDASSKVSEANIRNWFNQINTYLSEKNYSEILNDPTRIFNGDETNFMMCPKGGKVLAPRGAKNIYETDRGQAKENVTVMFSFSASGNMTPPLVVFPYKRMPSDILQSIPEGIKWLKSDSGWMTSEVFYDYIKDIFYPSIIENKIALPIILYVDGHKTHLTYALSKLCEELKIILICLYPNSTRILQPADVSVFKPVKTGWQRAVQNWRIVNVGKKLYKVNFTPILKNVIETSVKEKNIKNGFRACGLFPFDANAIDYSKCLGKNSREFHDTGEHDLVKTLTFKEFAEFAGENKIEELKHSDEYLNTHSEDFSILLKIYKRLSAGEIQYEDIQGEDLNLNDDPIEFETEDIEDFSEPKCRQKPKDSLINEIQTIPLEDCEIQNYEIVDEINQNLVQDIPIIFLNQSSIEITDFLSVPETPVRTGNRNTERRSFIISSTPFQKAEEIKIEKKITAANLKEEKLNKRIENKKLKEQKARIIAQRKVERMEIKEKKKQKINKSNKNENINMSNKENSNRFNFLSTTNSSETATNNILTDILSDTDSHIKNNNTKEAHVRQLFGEPQQVEQKNPYVNDIEVSVCKKRKYHINCAIKMDSDNNMDDLNLFSCKVCIVSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297322;
- 90% Identity
- -
- 80% Identity
- -