Rlae018234.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:123497083-123509241[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-09 4.1e-06 27.4 0.0 3 41 24 62 22 64 0.92 2 2 9 6.5e+03 -2.0 0.0 28 38 276 287 276 289 0.84
Sequence Information
- Coding Sequence
- ATGGcTAATATAGAGAGAGAAACAGGAAccatcagtaaaaaaaaaagttcaagaCTTCCACCTGACATCGAAAAAATTAAAGCAGCTTTAATTGACATCAGAGTTAACAACTTAAGTACCCGCAAAGCATCTGAAAAATATGGTATCCCACGAACCAAAATTCAAGACCGCTTGAATGGCAAAGTAAAAGAAGATTGCAATAAAAAAGGACCTGATCCATACCTTTCAATGGAAGAAGAATTACAAATAGTGAAATGGTGTAAGGATCTTTGTGCATGTggatttccaataaaaaattcgGATTTATTGAACACTGTTCAAATGATAATGAAGtctgaaaaaagaaaaacaccATTTAAAAATGGAAGACCAGGCCGTACGTggataaaatctttttataaacGTCATCCTTCACTGGCCgataaactatatgaaaataACCTTCCACCATCAGTTTTGTTAAGGGATTCGATTGTAAGTACATCTAGCCATATACGTGCCAAAGAAGCACAAAAAATAAAGATTCATCGTTCACGTGCCAATAACATCAATGAGCCAGACGATCTTCAAAGTGTTAATATTCCGGAAGAAATTAGGTATCTGGAAGGAGAGCTATTTATTTTGTGCGAAGATGAATTTGATGGTGAAAACATAATACTTATGGGAACTAAATCGTCCTTAAAACATCTTGGAGAATCGAGTTGTTGGATTATGGATGGAACTTTTGATGTAGTTCTTTCCATAATGCGACAACTTGATACTGATGATATGGAAAAACATGATGAAATGAAGGAAGCTCATCGTAAACGGCCGGTAACCGCAATTATAAGTAAATCTTCCTTATCAAACGAGTACATCAACACATTATTTCAATCAAACACAAGaGAACCATATAAAACTAAAGGAGCCCGAAAATTAATTGATACTGAAGAAATTTCTAGACAACTattaaacgTTTCAGACAATGAGTACGAAGATGACACTGCTACAACTTCAGTTATTTCATCTCAATCCTCATCGATTAAGCAAACGCCTATAATGCCTTTATGGACTGAAAAACcgaattga
- Protein Sequence
- MANIERETGTISKKKSSRLPPDIEKIKAALIDIRVNNLSTRKASEKYGIPRTKIQDRLNGKVKEDCNKKGPDPYLSMEEELQIVKWCKDLCACGFPIKNSDLLNTVQMIMKSEKRKTPFKNGRPGRTWIKSFYKRHPSLADKLYENNLPPSVLLRDSIVSTSSHIRAKEAQKIKIHRSRANNINEPDDLQSVNIPEEIRYLEGELFILCEDEFDGENIILMGTKSSLKHLGESSCWIMDGTFDVVLSIMRQLDTDDMEKHDEMKEAHRKRPVTAIISKSSLSNEYINTLFQSNTREPYKTKGARKLIDTEEISRQLLNVSDNEYEDDTATTSVISSQSSSIKQTPIMPLWTEKPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -