Rlae032017.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- bab1
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:14021533-14023937[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-12 7.5e-10 39.4 0.0 3 45 442 484 440 484 0.92 2 2 1.1 8.3e+02 0.9 0.8 4 20 591 606 590 606 0.91
Sequence Information
- Coding Sequence
- atgggtAGCAGCGAAGGACAAACATATTGTTTAAGATGGAACAATCACAAATCaaatttagttgaaatattAGATGCATTAATTAAAATGGAATCATATGTTGATTGTACAATTGTTGTTGATGATCAAGTACAATTTAAAGCACATCGTGTTGTATTAGCAGCTAATTCACCatattttcaatcaatattaCAAGATGTCCCAATGGATCATTGTAGTATATTATTTCCTGGTGTACAGGCATTTGAAATGCGTGCATTATTGGAATATATGTATACGGGTGAGGTAAATGTAACACAAAgtcaaataccaaaaataatgaaaattgctGAACAATTAGAAGTTAAAGGTTTATTTGATATGACTGATTTAaaagctaaatttaataaatttgatgaaaatacaacaacaacaacaccaacaacatcatcaacaacaacaaatcatcatcatcatcattatccaTTATCACAACAACAATTACCATCAACACATAATACAActgcatcatcatcatcaatattttcatcTGGAAATAATACAGAACAAAataatagtagtagtagtagtagtggtAGAAGAAATGATGAAAATCGTCAAATTCATTCGAATATTATTGGTGGCGgtggtagtagtagtagtagtgatTTACAACATAATCAACAATCTATTGATTTACCATTatcacatcatcatcatcaacaacaacaacaatcatcaCCAGTAATTACAACATCAACAAATATAACAACAGCAGCACAGAGTAGTAGTTCATCACCGCCATATACAACATATAAATCACCATATTCTAGTCTGTATACAAAAAGTCCAGGACCATCAACATCAGATCGTCAACATTGGCCATCAATATCACCATCATCAGTTATACCATCAGTATCAATaccaacaacagcagcagcagcagctaTGTTAAGTTCAGTATATGAAAGTGCAGCTGATATGAATCcattaaaaagaaagaaattatcatCGATCTCAAGTATGTTAATGTCAAGAGATACACCAATTTTAAGAAATGTTTTAGCCCAAACACATGCAGCTGATTCATCACAACCAATGCCATTAGTATGTCAATCATTGAAACAAGAAAGAACAGAAAAAAGTGCACCATCAGTTGGTGCATCGGATTACAGTAATAATGAAAGGAAATACAAACATGATGAACCACATTCACCATATACAGATAAATCATTTGAAGATGATGGTATAGATGAACCAAAATATTTAGGTGATTCACGATCATTTTCACAACAATCAAATTCACAAAAACCAGAATGGAAACGATATAAACAGTATACACGCAGTGACATATTAGCAGCAATTGAATGTGTACGTAATGGTATGAGTGCTTTACAAGCATCACGTAAATTTGGTGTACCATCACGAACACTTTATGATAAAGTTAAAAAACTTGGTATTACAACTGGCCGTCCAATGAATCGTACAATAAAACGTAGTCCAAGTAGTGGCAGTAGTCCAGCTAGTTTTCCATTTGGTTTAAGTGGTACAAGTAATCCATATGGCCAATCATCAACAGATGCTATTTTATCACAAATACATCATGAATCAAATGAacatcatcaccatcatcatcatcatcatcatcgggATAAAGATCGTGGTGAACATCATATACCATCAAATATACCACATCCAGCAGCTGCAGCTCTATTAGATCCAGCATTTTTACAACAGGCATTTGAATCACGTGGTGGTGATATAGCTGGCCGAGAAGCATTACATGCAATGGCATTAGCAGCAGCTGCACATGCTGCTGTTAATGGTATATCAACTAGTCCCGGTACAAATGGTACAGCACGTTCACCAAGTCCAGGTTTTGCCATGAAATATTCTAGATCTCAAAGTACACCGCCGCCGCCGCCATCATCTCAACTAACACGAGAGAGAGATAGAGACTTTATGGATAGAGAAATTGAACGTGATGAACGGGATCGAGAACATGAAAATGATATGGATGATGAATTTGATCGTAGTGAACGAGAACATGATAGAGATCATGAAATGGATCATGATACTGAAGAAGATGAAAATCATGTTGAAGATTTATCAGTATCAAGAAAAGATACAAAATCACCGGTTGTTGCACAAATTTCACCAAGACCACCATCTAATCATCATTCCTATGGAACAGTACAACAATCATCTGGTGGTGTTATAGTACCACCAATGACGACTAAATTATCACCAAATGGTGgtgaagattttaaaattaatctagaACATAAACGTGAAATATTAACTGATGATGCTAgagaaaataattaa
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKAKFNKFDENTTTTTPTTSSTTTNHHHHHYPLSQQQLPSTHNTTASSSSIFSSGNNTEQNNSSSSSSGRRNDENRQIHSNIIGGGGSSSSSDLQHNQQSIDLPLSHHHHQQQQQSSPVITTSTNITTAAQSSSSSPPYTTYKSPYSSLYTKSPGPSTSDRQHWPSISPSSVIPSVSIPTTAAAAAMLSSVYESAADMNPLKRKKLSSISSMLMSRDTPILRNVLAQTHAADSSQPMPLVCQSLKQERTEKSAPSVGASDYSNNERKYKHDEPHSPYTDKSFEDDGIDEPKYLGDSRSFSQQSNSQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGSSPASFPFGLSGTSNPYGQSSTDAILSQIHHESNEHHHHHHHHHHRDKDRGEHHIPSNIPHPAAAALLDPAFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPGFAMKYSRSQSTPPPPPSSQLTRERDRDFMDREIERDERDREHENDMDDEFDRSEREHDRDHEMDHDTEEDENHVEDLSVSRKDTKSPVVAQISPRPPSNHHSYGTVQQSSGGVIVPPMTTKLSPNGGEDFKINLEHKREILTDDARENN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297621;
- 90% Identity
- iTF_01297621;
- 80% Identity
- iTF_01297621;