Rlae001774.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- eIF1
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:18320015-18324083[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.5e-13 6.9e-10 39.5 0.0 4 43 303 342 301 344 0.92 2 3 0.052 38 5.2 0.0 24 38 370 384 351 387 0.74 3 3 1.1e-16 8.1e-14 52.1 0.1 4 40 412 447 412 450 0.96
Sequence Information
- Coding Sequence
- atgAATCAACTAAAGTGGCTAGGACATGCATCCACTTTATTGGATATGCAAAAAAAACTACAATGCGGAAGTGAACTTTGTGATGTAAAGCTAGTTAGTGGcaatggaaaaattatgtatGCACacaaagcaattttattttcatcaagtGACTTTTTCAgaacaatattcaaaaatataccTGATACATCAGAAATATGTACAATATTAATACCAGATATAAAAGATACAATCCTCAACgatatattagattttatttatacaggTTCAATTAGTTtgctatcaataaatttatcagaGTTCCTTgagaacataaatatattaggtATAAAAAGTGCTATAAGCTTTGAATGCCATGtaacaaataaagataaaataactaaatcagAAGATAGTATTATGTTTGAACATGCAGTCATCCAGGAGGATCATGATGAAAATATGGAAAGAGAGCAGCATATtattgaagaagaagaagacgAAGATGAAGAAATAATTGATACAATAGATTCTTCAGTTGATACAGATCAAAAGAGTATTCAATATTTAGAAGTATTTAATTCTGGTGATAATAAAATTGGACAATATGCCATTCAAAGCACTACTATTGAAGAAAATGCTAGTGGAGATTACATATTAACGGAAAATGCTGATAATACATATACATTAActgaacaaaaaatacaattaaatgaaTCTGTTAAAACAACAGAATCTCAATCGGATATATCAACTACACCAACTCTACAACCAATTAAAATGGCGGCTACTATAAAACCACtcacaaataaatcaaaattcacCAAGCAAAGTACAAAAGCAGAAAATCCAGAAGATATTCTCTATAGCAATAACGATGATGTAATTCCAATCGGAAAGCCTAGCACTTCGCAAGGTCGTGCGCAAGCATTCGATTCGGCTGTTCGAGCTGTTATTAATGAGGGTATTAGTTTACAAAAAGCTGctgaaaaatttcatatatccaAAACAGTTCTATGGCGAcgtgttaaaaaaaatccagcatataataaaacatatcgGGAAAATCCAATTATTGAAGCAGCAATACAAAAGCTAGAAAAAGGTGAATCATTAAAAAGTGTTAGCCAAGCATTAGAAATACCAATGTCAACATTACATCGACATAAAATGCGATTGGCTGATGAAGGTAGATTACCAGaacatatacaaataaaaagaaGAGATTTggaatcaaaagaaaatttaaaaattaaattagctaAAGCTGTTGCAGCATGTATTAATGGTATGTCACAAAATCATGCTGCTGTAGTTTACGAAGTACCCAAATCTACTCTATGGAGACATTTGCAAAGGAAATCGTTAGCCGAAAAAGCtgctaatgaaaataaaagtgaaGTTGTAGATAATGTTGATGACAAAGTTAacCCCTTTGCTGATGCAATCAAGGGCGCTGATGATAATGTCCAAGACGGTCTTGTGCATATACGAATTCAGCAAAGAAATGGTCGTAAGACATTAACTACAGTTCAAGGACTTTCATCTGATTATGACCTGAAAAAAATAGTACGAGCATGTAAAaaggAATTTGCGTGCAATGGAACTGTAATTGAGCATCCTGAATACGGGGAAGTACTGCAACTTCAAGGAGATCAAAGAGAAAACATATGCCAGTGGCTTACCAAATCTGGTTTAGCTAAATCAGATCAATTAAAGGTTCATGGTTTctaa
- Protein Sequence
- MNQLKWLGHASTLLDMQKKLQCGSELCDVKLVSGNGKIMYAHKAILFSSSDFFRTIFKNIPDTSEICTILIPDIKDTILNDILDFIYTGSISLLSINLSEFLENINILGIKSAISFECHVTNKDKITKSEDSIMFEHAVIQEDHDENMEREQHIIEEEEDEDEEIIDTIDSSVDTDQKSIQYLEVFNSGDNKIGQYAIQSTTIEENASGDYILTENADNTYTLTEQKIQLNESVKTTESQSDISTTPTLQPIKMAATIKPLTNKSKFTKQSTKAENPEDILYSNNDDVIPIGKPSTSQGRAQAFDSAVRAVINEGISLQKAAEKFHISKTVLWRRVKKNPAYNKTYRENPIIEAAIQKLEKGESLKSVSQALEIPMSTLHRHKMRLADEGRLPEHIQIKRRDLESKENLKIKLAKAVAACINGMSQNHAAVVYEVPKSTLWRHLQRKSLAEKAANENKSEVVDNVDDKVNPFADAIKGADDNVQDGLVHIRIQQRNGRKTLTTVQGLSSDYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKSGLAKSDQLKVHGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297647;
- 90% Identity
- iTF_01297647;
- 80% Identity
- iTF_01297647;