Rlae033284.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- retn
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:35620838-35640966[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-21 3.2e-17 63.8 0.0 15 89 10 82 2 82 0.94 2 2 2.5 1.1e+04 -2.0 0.0 21 27 121 127 109 155 0.58
Sequence Information
- Coding Sequence
- ATGGATATGACCCAATATCGAGTAGCTGATATGGgtacACCAATTAATCGTCTTCCAATAATGGCAAAATCAGTTTTAGATTTGTATGAACTTTATAATTTGGTAATTGCACGTGGTGGTTTAGTTgatgtgataaataaaaaattatggcaAGAAATAATTAAAGGACTTCATTTACCATCTAGTATTACAAGTGCAGCATTTACACTAAGAACACAatatatgaaatatttgtatcCATATGAATgtgaaaaaaagaatttaagttCACCATCAGAATTACAAGCAGCTATTGATGGTAATCGACGAGAAGGTAGAAGATCTAGCTATGGTCAATTTGAAGCCATGCACAATCAATTACAACAaatgccaCAAATGCAAAGACCTAATGTATCAAATGGTATGCAACAAATATCTCCATTAGCTTTAGTTACTCATGCTAATCAACAATCAGCAGCAGCTGCAGCTGCTGCTGTAGCTCATCATAGACTAATGGCACCACCGCTTGTTACCCATGAACTAGAACAACacgAGGATCTATGGAATAATAACCTATGGAATAATGAAATGTTGGGATGGAAAATGGACTGA
- Protein Sequence
- MDMTQYRVADMGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSSPSELQAAIDGNRREGRRSSYGQFEAMHNQLQQMPQMQRPNVSNGMQQISPLALVTHANQQSAAAAAAAVAHHRLMAPPLVTHELEQHEDLWNNNLWNNEMLGWKMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -