Rbic033878.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- nfxl1
- Assembly
- GCA_029963845.1
- Location
- JANEYF010002810.1:2053339-2072573[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4 7.8e+04 -7.8 5.6 15 19 166 170 165 170 0.81 2 21 0.26 5.1e+03 -0.3 0.4 4 10 201 207 200 207 0.95 3 21 6.1e-08 0.0012 20.9 17.0 1 19 215 232 215 232 0.99 4 21 3.9e-07 0.0076 18.3 21.2 1 19 268 286 268 286 0.99 5 21 2.7 5.3e+04 -3.6 1.0 6 10 311 315 310 315 0.88 6 21 5.4e-10 1.1e-05 27.4 10.4 1 18 321 338 321 339 0.99 7 21 2.6 5e+04 -3.5 1.0 5 10 363 368 363 368 0.86 8 21 1e-06 0.02 17.0 12.9 1 18 374 391 374 392 0.97 9 21 0.6 1.2e+04 -1.5 0.5 1 4 401 404 401 405 0.89 10 21 0.00051 9.9 8.3 15.9 1 18 426 443 426 444 0.94 11 21 2.9e-10 5.7e-06 28.3 10.7 1 18 453 470 453 471 0.98 12 21 1.2 2.3e+04 -2.4 0.9 5 10 499 504 499 504 0.94 13 21 0.016 3.1e+02 3.6 4.3 9 19 519 529 517 529 0.89 14 21 1.7 3.3e+04 -2.9 6.6 4 12 541 549 539 549 0.89 15 21 4 7.8e+04 -6.9 4.5 14 18 577 581 577 581 0.86 16 21 2.3 4.5e+04 -3.3 0.6 6 10 608 612 607 614 0.62 17 21 0.00051 10 8.3 5.2 1 12 618 629 618 629 0.94 18 21 4 7.8e+04 -4.9 2.7 5 7 645 647 642 650 0.53 19 21 4.7e-05 0.93 11.6 20.3 4 19 660 675 658 675 0.94 20 21 2.6e-06 0.051 15.7 12.0 1 16 718 732 718 738 0.93 21 21 1.9 3.7e+04 -3.1 0.9 6 10 768 772 767 772 0.89
Sequence Information
- Coding Sequence
- atgcATAGCCGACAAAAACCACCCAACCCatggaataaaaatattcagcagaaaaaaacaaaacaaaatgtttccCATAACCTAGAAAAACCCTCACCGACTCCTTCAGAAGTTAAGTTCAAAGAAgcacaatcaaaattacaagCAGCTGTTAAAAAACATGTGAAGGATTATGAATCTTCCTCTGAAGAGGAAGAACTAGAATCTAGTAATTTGATtgaagatatattgaaaaattataaaaatactggAGGAGGAAATGAAAACCTTGGAAGAACACAAAGTTTCATTCAGGAAGCATTTCTTTCGGGTGCTGCTACTTGTCTTATCTGCATATCCAGAGTTAGGAGAGATGATGAGATATGGAGTTGTACTAGTTGTTATGgattttttcatattatgtGTATTCAGCGATGGTCCAAAGATACTATAACTCAACAAAAACAAGCTTTAGAGGGTCAAATTTTAGTTCATCTAACAAAGCTTTGTTGGTGTTGTCCAAAATGCCGTTCTGAATATGGTTCAGAAGACATTCctacaaaatatttctgtttctgcaaaaaaactgaaagtCCAAAATTTCAGCCATTTTTAGTACCTCATTCATGTggagaaatatgtaaaaaagatTTAATTCCGTACTGTGGACATAAGTGCCTACTTCTTTGTCACCCAGGTCCATGCCCTCCATGTCCAGTGACTGTAAGTGTGACTTGCTATTGTGGGTCACAACCTCCAATAACCCAAAGATGTAGTAATAAAGAATGGTCCTGTAAAAATGCTTGTGGGAAAACGTTAGAATGTGGTAAACACACTTGCGCTGATTGTTGTCACCCTGGAAAATGCCAGCCATGTCCCAAGAAAAGtatacaaaaatgtatgtgCAGATCACAGCAAAAGTTACGTGATTGTGCTACTCCTTCATGGCAATGTGATaaggtttgtaatAAGTCACTGGAGTGTGGCAATCACAGGTGCCAAGAAGTATGCCACTCGGGAGTGTGTGACAGTTGTATATTGAACAAACCCAGGACATGTCCATGTGGTAAAACAAGTTATCAGTTGCCCTGTACAGAAGATACACCTACTTGTCCAGATACGTGTGACAAATTACTTGAGTGCGGTGTTCATACTTGTAATCAGAGATGTCATAAAGATAAATGTGGGCCGTGTCTAGAAACTGTGGTAAAAGCATGTAGATGTGGTCAGCATTCTAAGGAAATTCAGTGCTACAAACCATATTTGTGTGAAACCAAATGTAAAAACGTGAAAGATTGCAACAAACATCCTTGCAATAGAAAGtgctGTGATGGTAATTGTTCACCTTGTGAAAAGCCGTGTGGACGAACATTACGCTGTGGAAATCATAAGTGCAATTCAATATGTCATAGTGGACCTTGTTTTCCATGTATGCTCAATGATATTGTTTCTTGTAGATGTGGGTTAACTAAAACTAGAGTGCCTTGTGGAAGCAAACATAAGACCAAACCTCCTAAATGTAATGAAATATGTTCATTACCACCCGATTGTCACCATGAAAAGAGGGAAAATCACAAATGCCATTTTGCCGACTGTCCTCCATGTcgacaaatatgtaataaagtgAGAACGGCTTGTCCACATCCTTGTACTGCACAATGTCATTCTTCTGTACTTGTAAAAATAGAAGGACAAAAGGCATCTATGCCATGGGAACAAACAAaaccaaaaattgaaaaaagagCAATACCGTGTCCGGATTGCATTGTTCCAGTACCAGTTACTTGTTTAGgAGAACATGAAACTGCAGACTGGCCTTGCTATATGGCGAAACCAACAAGTTGTCATCGTCCATGTGGAAGATTATTAGAATGTGCAAATCATACATGTACTCTTCCATGTCATACAGTTGAAGCAGCTCCAGACACAATTAAGGCTGGGTCTAATTGTGAAACATGCGAGAGTAACTGTGTCAAAGAAAGGCCAGATGGATGTCCACACTCATGTCCAAAACCCTGTCATCCAGGTCAATGTCCCCCATGCAAAAATATGCTACGTATAAAATGCCACTGTAGCCTTACCCAACCTTATGTTAGTTGTAGTGATTGGCTTAATCTAAATAAAAGAGAAGAATTACAATGTTGTGGTAATCAGTgtccaaaaaatTTTGAATGTGGTCATAGATGCAAAGCTAACTGCCACTCAGGACCATGTCCGAATGAGGAATTGTGCCAGAAAAAGGTTAAAGTTATGTGTAAGTGTAAACGCATCAAGAAAGAATTTCATTGTGAGATTGTTCGtaaaaaattagcaattgtGGAGTGTGATGAGGTATGCGAGAAGAAGAAAGAAGAAGAGAGAATACTTAAGGAAGctattaataaacaacaaaaactaGAAGAAGAACTTAAGAATAGGAAAGAATtggaaaaatatcaaaagatgTTTGAAGGAAAAAAGAAGaatagaaacagaaaattttatgaagaagaagaagaaatcagtttaattaagaaatacCGGTTTGTTTTCTTATCTGTTACTTtattagttatttcttttttaatatattatttcctTAGTTAA
- Protein Sequence
- MHSRQKPPNPWNKNIQQKKTKQNVSHNLEKPSPTPSEVKFKEAQSKLQAAVKKHVKDYESSSEEEELESSNLIEDILKNYKNTGGGNENLGRTQSFIQEAFLSGAATCLICISRVRRDDEIWSCTSCYGFFHIMCIQRWSKDTITQQKQALEGQILVHLTKLCWCCPKCRSEYGSEDIPTKYFCFCKKTESPKFQPFLVPHSCGEICKKDLIPYCGHKCLLLCHPGPCPPCPVTVSVTCYCGSQPPITQRCSNKEWSCKNACGKTLECGKHTCADCCHPGKCQPCPKKSIQKCMCRSQQKLRDCATPSWQCDKVCNKSLECGNHRCQEVCHSGVCDSCILNKPRTCPCGKTSYQLPCTEDTPTCPDTCDKLLECGVHTCNQRCHKDKCGPCLETVVKACRCGQHSKEIQCYKPYLCETKCKNVKDCNKHPCNRKCCDGNCSPCEKPCGRTLRCGNHKCNSICHSGPCFPCMLNDIVSCRCGLTKTRVPCGSKHKTKPPKCNEICSLPPDCHHEKRENHKCHFADCPPCRQICNKVRTACPHPCTAQCHSSVLVKIEGQKASMPWEQTKPKIEKRAIPCPDCIVPVPVTCLGEHETADWPCYMAKPTSCHRPCGRLLECANHTCTLPCHTVEAAPDTIKAGSNCETCESNCVKERPDGCPHSCPKPCHPGQCPPCKNMLRIKCHCSLTQPYVSCSDWLNLNKREELQCCGNQCPKNFECGHRCKANCHSGPCPNEELCQKKVKVMCKCKRIKKEFHCEIVRKKLAIVECDEVCEKKKEEERILKEAINKQQKLEEELKNRKELEKYQKMFEGKKKNRNRKFYEEEEEISLIKKYRFVFLSVTLLVISFLIYYFLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -