Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: -
Assembly: GCA_029963845.1
Location: JANEYF010003791.1:128983-137886[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 2.3 10.8 1.5 1 23 304 326 304 326 0.99

2 9 0.0011 0.23 14.0 2.5 1 23 335 357 335 357 0.99

3 9 0.21 43 6.9 2.8 1 23 398 420 398 420 0.97

4 9 7.5e-05 0.016 17.7 0.5 1 23 429 451 429 451 0.97

5 9 0.022 4.4 10.0 0.2 1 23 460 482 460 482 0.98

6 9 0.006 1.2 11.7 2.1 1 23 486 508 486 508 0.98

7 9 1.1e-06 0.00023 23.4 2.0 1 23 517 539 517 539 0.99

8 9 0.0031 0.63 12.6 2.6 1 23 548 570 548 570 0.96

9 9 0.008 1.6 11.3 2.0 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	2.3	10.8	1.5	1	23	304	326	304	326	0.99
2	9	0.0011	0.23	14.0	2.5	1	23	335	357	335	357	0.99
3	9	0.21	43	6.9	2.8	1	23	398	420	398	420	0.97
4	9	7.5e-05	0.016	17.7	0.5	1	23	429	451	429	451	0.97
5	9	0.022	4.4	10.0	0.2	1	23	460	482	460	482	0.98
6	9	0.006	1.2	11.7	2.1	1	23	486	508	486	508	0.98
7	9	1.1e-06	0.00023	23.4	2.0	1	23	517	539	517	539	0.99
8	9	0.0031	0.63	12.6	2.6	1	23	548	570	548	570	0.96
9	9	0.008	1.6	11.3	2.0	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGGAGGATAAAGAATTATGTAAATTGTGCCTAAAAGCCATAACTGACAGCAGTTTTGTCAGTATGGACGACGGCAAAAGGGATATGCTTGTGTGTATTGTTCCTCATATAATTTTGGATATAAACTCTATcctaaaaatatgtaaagaatGTTTTGAAAGCCTTCAAACATGTTATGAGttcaaaactttttgttttgaaCAGCGCGATGTTAAAGATCTTGAAAGTAACGAGACTGCGCTCATGGTATATAAATCAGAATATAAATGTTATCTTTGTTGGGGATCTGTAGAAATAAATGCTTCAGATGAGGTAGAAAGCGAACAAGCTTCTTTAGAACTAATGATGAAAGAATGCCTTCCAGAATGGaatgtTACTCTTAAAGATAATTCAACGTTGTGTACAAAATGTTCAACTTCTCTTAGGAATATGTTTAGCTTTATTAGAAGATGCCTGGAGGTTgtagataaaattaaaagtattgttTCTCTGAAGCCGGAGAATAAAGATCAAGCAAGCTCATATGACGTTTCTAACTTGGCACAATTCTGTTTtgtgaaaatagaaaatactgATACACACAGTGAGGAAGCTGATACTGCAAAGGATCATATCGATAAAATTTCTGTCTTCAAATTAGAACCAGAAGAGAAAGATGATGAATTTGAAGAATTGACTGAACTCACTGATATTGAAGTCAAATCTGAAGTTATcgaagaagaagaaagcgaacAGGAAATAACTGACCAGGAATATGATGAAATGAAACTCGAAGAAAATAAAGAGGCAGCAATAATCCAACAAACATCACCTCCATTTAAATGTACACAATGCATGTACAAGACAAATGTATTGCATAGATTCAAGGCACACTGTCTTAAGCACAAGGATCCTTTAAGCGTTAAGAAGTTCAAGTGCCCACTATGTTTGTACGAAGCGAAATATAACTACCATGTTCAAGACCACATGCTGACACACCTCGACCCTACTGAGACAACCATGTTCAAATGTTACAACTGTTCGTTTGAGACAAAACGTAAATCGGCACTTAGAATGCACCTTCTAACCCACAAAGATCCCTCGGAACTGAAAATGTTCAAGTGTCAGTCATGTTCGTTTGAAACAAAAGTGGGGAGGGACTGCCTGAAGAAACACCAGGCTAGACACAAATCATTAAACGATGGAATTACGTACAAATGCGAGTCCTGCAGTTATGTAACGAATAAAAAGCATTTACTTAGGCCGCATTTACTACGTCACAAGAACCCATCGGACATAACGATGTACAAGTGTGATTGGTGCCCGTATGAGGCAAAACAAAAGAGCAACCTTCAAAAACATGTAGTGAAGCATAAGGAACCTTCCGAGATAACTATGTATAAATGCGACATTTGCCCATACGCGACAAAGTGGCAGAGCGGGATTAAGGCGCATCGAATGAAACATAACAAACGTCACAAGTGTAATAAATGTGATTTTGAAGCAGATGAAAGAAGTGACTTGTTTCGGCACTTACAAAGCCATCCAGAGGATGCTTCGTTGAAAATTTACTCATGCGAACTGTGTGGTTACAGTACTCGATACAAGACGAATCTAAATAAGCATATGAACACGCACAAGGATTCTTCGGAAGTTCCTACGTTTCAATGTGATCAGTGCTCGTATGTGACGAAGCATAAGACGGCTCTTAAAAACCATGCATTTGTTCATATGGACACATCAGAGCTCACATTGTTCAAATGTGACTTATGTTCATATGAGACCTTTAGAAGGAGCTATTTACTGAAGCACGTCGATAGGCATAAGGTAGCTAAGGAAGAGACTACTGATCTTATATGA
Protein Sequence: MEDKELCKLCLKAITDSSFVSMDDGKRDMLVCIVPHIILDINSILKICKECFESLQTCYEFKTFCFEQRDVKDLESNETALMVYKSEYKCYLCWGSVEINASDEVESEQASLELMMKECLPEWNVTLKDNSTLCTKCSTSLRNMFSFIRRCLEVVDKIKSIVSLKPENKDQASSYDVSNLAQFCFVKIENTDTHSEEADTAKDHIDKISVFKLEPEEKDDEFEELTELTDIEVKSEVIEEEESEQEITDQEYDEMKLEENKEAAIIQQTSPPFKCTQCMYKTNVLHRFKAHCLKHKDPLSVKKFKCPLCLYEAKYNYHVQDHMLTHLDPTETTMFKCYNCSFETKRKSALRMHLLTHKDPSELKMFKCQSCSFETKVGRDCLKKHQARHKSLNDGITYKCESCSYVTNKKHLLRPHLLRHKNPSDITMYKCDWCPYEAKQKSNLQKHVVKHKEPSEITMYKCDICPYATKWQSGIKAHRMKHNKRHKCNKCDFEADERSDLFRHLQSHPEDASLKIYSCELCGYSTRYKTNLNKHMNTHKDSSEVPTFQCDQCSYVTKHKTALKNHAFVHMDTSELTLFKCDLCSYETFRRSYLLKHVDRHKVAKEETTDLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -