Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: -
Assembly: GCA_029963845.1
Location: JANEYF010002153.1:171199-175794[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.005 1 12.0 1.7 1 23 424 446 424 446 0.97

2 11 0.0048 1 12.0 1.0 2 23 456 477 455 477 0.97

3 11 0.11 23 7.7 2.0 1 23 486 508 486 508 0.97

4 11 0.00012 0.024 17.1 3.8 1 23 517 539 517 539 0.99

5 11 0.6 1.2e+02 5.4 2.7 1 23 568 590 568 590 0.97

6 11 0.0016 0.32 13.6 4.3 1 23 599 621 599 621 0.98

7 11 0.48 1e+02 5.7 3.4 1 23 630 652 630 652 0.98

8 11 0.012 2.5 10.7 3.6 1 23 661 683 661 683 0.98

9 11 0.016 3.2 10.4 3.9 1 23 692 715 692 715 0.95

10 11 0.034 7.1 9.3 3.5 1 23 724 746 724 746 0.98

11 11 0.0011 0.23 14.0 2.2 1 23 786 808 786 808 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.005	1	12.0	1.7	1	23	424	446	424	446	0.97
2	11	0.0048	1	12.0	1.0	2	23	456	477	455	477	0.97
3	11	0.11	23	7.7	2.0	1	23	486	508	486	508	0.97
4	11	0.00012	0.024	17.1	3.8	1	23	517	539	517	539	0.99
5	11	0.6	1.2e+02	5.4	2.7	1	23	568	590	568	590	0.97
6	11	0.0016	0.32	13.6	4.3	1	23	599	621	599	621	0.98
7	11	0.48	1e+02	5.7	3.4	1	23	630	652	630	652	0.98
8	11	0.012	2.5	10.7	3.6	1	23	661	683	661	683	0.98
9	11	0.016	3.2	10.4	3.9	1	23	692	715	692	715	0.95
10	11	0.034	7.1	9.3	3.5	1	23	724	746	724	746	0.98
11	11	0.0011	0.23	14.0	2.2	1	23	786	808	786	808	0.98

Sequence Information

Coding Sequence: ATGGAAAACCGACTAATAATATGCagattttgctttaaaaaatgtaacaattaTGAAGCCTTGAACgaaattgcgaaaaaaatttttggtacaCTCTCGGTGAAAATaaaTCTTGCTGTAAGTGACGAGCCTGTCATGTGTACGAAATGTGCAGAAGTCCTTAAAAATTGTTACGATTTTAAATCTACATGCCTTCACACACAAGATTGTATACTTCCCTTTGTCAACAAAGATAATGTGAAACTGGATTTAAAAGATGTTTATCTAAgcataaaagaaaatgaaaacgttGTTGGCATTCCCGATGATAACGTTATATGTGGATTTTGTCTGACTTTATCGGAATGTTCTACTGTTACATTTTTAGACAATATCAGAGAAGATGTAATGTTGAAGAAAATGATGTTAGAGAAATGTTTTCCAGAATTAGACGTGAGTTTTATCAAGAAACCTGCAATATGTATACCCTGTCAAGAATCTCTACAGAATTACAATAGCTTTATAACCAACAGTTTGTCTATTGAAGAAAAGATTAATAAATATCGTGAGTCAGCAGAAGTAAACGGTGAAGGTCCGATAAATCTAATTGATGTACTGCATTTTAAGTATGAAGATGAGAAcaaaattgatataattaaaatggaaGGCAACTTCTCTGAGATAAAAGAAAGTGAGGTTAAATacgaaactaaaatttttataaaagtggAAGATCAGACTTTTAGCAGCGCATTAGAGTTTACATCAGAAAATGTGTTAACCTGTAAAACAGATAATAGCAAAGTCGATACAataaaaatggaagacaacttCTGTGAAGAAAAAGAAAGTGAGGTTAAACACGAAActgaaaagtttataaaaacgGAAGATCAAACTTTTAACAGTGTATTAGAGTTTACATCAGAAAATGTGTTAACCTGTCAAACAGCTGATAGCAAAATGGAAGATAGATTCTGTGAAGAAGAAGATAATGAGACTGCACACAACAATGAGCATGTGGAAGCGGAggatcaaaaatattttccatgtgaacaaattgaaataaaaatggagCAGCATGAACTGCACagTTGTGAAGATATCGTGATTTTGCCACAACAAGAATCCAGTGTTAAATTACCTAGAAggcagaaatatttaataacacatccTCGAGGAAATGTGACAAAAGCCATAACACACAAGTCAGAAACCTccttaaattgcaaaaaaaataatcttacaAGTCACACTTTAGTACAGAAAAACCATTCAGATATACTAATGTACAATTGTGATAAATGCTTATATACAAGTAAAAATAAGGAATTACTTAGAAAGcacaaaataatacacaaagATGCTACAGAAACAGCCATGCTGAAATGTGAGGCTTGTCCGTTTCAGACAAGATTTAAAGGAAACCTTAAGAAGCACCTACTGACCCATAAAAACTCATCAGAAGTAACAACGTACCAGTGTGGATCTTGTTCGTATCAGACAAAACATAAAAGTGATATTCAAACTCACGAATTAATCCATAAAGATCCTTTAGAAACAGCGATGTATCAGTGTGCCATTTGCCCGTACCAAACAAAATTTAAGTATCACCTTAAGAGGCACTTAATGACTCACAAAGACTCTTCAGAGGTAGTCATGTatagtaatgtttttaaatcacatATGTTAGCCCACAAAAACCCTTCAAAAATAACAGTATATCAGTGCGGGTCTTGTTCGTACCAGACCAAACATAAAAGATCTATTCAGAATCATGAATTAATCCATAAAGATCCTTCAGAGACAACGATGTATCAGTGTGCCACTTGCCCGTACCAAACAAAATTTAAGTATCACCTCAAAAGACATTTATTGTCTCATAAAGACTCCTCAGAGGTAGCCATGTACCGGTGTGAATCCTGttcatttcaaacaaaatatcaagAGACCATTCATAAACATATGCTGATTCATAAAAGCCCTTCAGAAGTAAAGATGCACAAGTGTGACTTATGTCCATAcctgacaaaatttaaaagataccTTACGATTCATATGCGAAACCATAAAAATCCTGATGAAATCATCAGACACCATTGTGAGATTTGTTCTTACAATACAGTTCATAAACCTGATCTTAAAAGACATATTATGTTGATGCACAAAACATCCTCAAAATTAACTCGGCACCAGTGCGATTCCTGTCCATATCAGACAAAATATAAGAAGTTCCTTACAAACCACAAACGGATTCATGAAAACCCTTTACAAGTAATGCATCAGTGTGAGTCCTGTCCATATGTGACAAAATGCAAAAGGTACCTTGTGAAACATAATATGCGAATCCATAAAAGCCGTGCTGAAATACCAATGTACCagtgtgaatcttgttcatatgagactaaatataaatatggtcTTAAAAGACATATGCTACAGCATACAATCtcttcataa
Protein Sequence: MENRLIICRFCFKKCNNYEALNEIAKKIFGTLSVKINLAVSDEPVMCTKCAEVLKNCYDFKSTCLHTQDCILPFVNKDNVKLDLKDVYLSIKENENVVGIPDDNVICGFCLTLSECSTVTFLDNIREDVMLKKMMLEKCFPELDVSFIKKPAICIPCQESLQNYNSFITNSLSIEEKINKYRESAEVNGEGPINLIDVLHFKYEDENKIDIIKMEGNFSEIKESEVKYETKIFIKVEDQTFSSALEFTSENVLTCKTDNSKVDTIKMEDNFCEEKESEVKHETEKFIKTEDQTFNSVLEFTSENVLTCQTADSKMEDRFCEEEDNETAHNNEHVEAEDQKYFPCEQIEIKMEQHELHSCEDIVILPQQESSVKLPRRQKYLITHPRGNVTKAITHKSETSLNCKKNNLTSHTLVQKNHSDILMYNCDKCLYTSKNKELLRKHKIIHKDATETAMLKCEACPFQTRFKGNLKKHLLTHKNSSEVTTYQCGSCSYQTKHKSDIQTHELIHKDPLETAMYQCAICPYQTKFKYHLKRHLMTHKDSSEVVMYSNVFKSHMLAHKNPSKITVYQCGSCSYQTKHKRSIQNHELIHKDPSETTMYQCATCPYQTKFKYHLKRHLLSHKDSSEVAMYRCESCSFQTKYQETIHKHMLIHKSPSEVKMHKCDLCPYLTKFKRYLTIHMRNHKNPDEIIRHHCEICSYNTVHKPDLKRHIMLMHKTSSKLTRHQCDSCPYQTKYKKFLTNHKRIHENPLQVMHQCESCPYVTKCKRYLVKHNMRIHKSRAEIPMYQCESCSYETKYKYGLKRHMLQHTISS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -