Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: Hivep1
Assembly: GCA_029963845.1
Location: JANEYF010004229.1:76701-100578[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.8e-05 0.014 17.8 1.0 1 23 200 222 200 222 0.98

2 5 0.0063 1.3 11.6 4.4 1 21 228 248 228 252 0.89

3 5 0.45 92 5.8 0.1 2 20 441 459 440 461 0.90

4 5 4e-06 0.00083 21.7 2.1 1 23 1111 1133 1111 1133 0.99

5 5 2e-06 0.00042 22.6 4.7 1 23 1139 1163 1139 1163 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.8e-05	0.014	17.8	1.0	1	23	200	222	200	222	0.98
2	5	0.0063	1.3	11.6	4.4	1	21	228	248	228	252	0.89
3	5	0.45	92	5.8	0.1	2	20	441	459	440	461	0.90
4	5	4e-06	0.00083	21.7	2.1	1	23	1111	1133	1111	1133	0.99
5	5	2e-06	0.00042	22.6	4.7	1	23	1139	1163	1139	1163	0.92

Sequence Information

Coding Sequence: atggaAAGCAGTGTTGATAGCTATCTACATAAGAAGTTCAAAAAGCAGCTTAGTATTGAACCAAAACCCCAAAACtatgataaagaaaataaaggatCTGCTCGAGCTTTGGAATCGAGTGAAGAAAAAGTCATTGAATGTAAAAATCAGGGAGAGTGTaataaaatagttgaaaatcAAATAACAATAGACAATAATGAAATTGTGCCAAATCAAAGTACAAATCAAAATAGCTCTTTTGTGCTAAACAATAGTAATTTTTCTAAGTCTTCCAtatcaatagaaaaatgtatagCGAACCAACAATCTTCGAACTCTTGCATATCATATGTAATTTCGAACCACCAAACCAATGAAGAACACTATAAACCTGTTAATTTTGATACAACATTTAGAACTGATCCGACCAACTCTACCATTAGTGTGTCTTCCATTTTAGATAACTTATATTCTAAGCAGAATTACATAAACAAAGAGGACATATCCTCATATAATTTACAAGACGATTAttcagtaaaattaaattcagcaGATGAATCTTCTGATACTAAAACAGAAGAAATACAGCCTCCACCTGATCGAAACTCAAgtggaaaatatgtttgtacATACTGTAACTTAGTATGTTCAAAACCAAGTGTTCTGCAAAAACATATTCGTGCACACACAAATGAAAGACCATATCCATGTGTTAGCTGTGGCTTCAGTTTTAAAACACGTTCTAACCTTTACAAACATTGTCGTTCCCGAACACATGCTAATAGAGTACTGGGCAATAAATCTCAGGAATCAAACAACGAAATGgataatcaaaatcaaaaacttCTTAGTCTTCCTAGAAGCCCCATTaatcattcagaaaataaagAAGAGAAGGCAATCTCGCaggatattaaattaaaaccttaTAAACCACGTTTTCATACAGCTaaaccattttttgaaaatgttgctaaagaaaatattgaagatgaAAGACAAAACAATAAACATGCCACATCAGATCTTCTGTCACATcacattaatgaaataataaacaaaaataattcgaTAGTAAATTCGAGTGAATCAACTTTCATAAAGAAACGTTTTAATGACATGATTGTagataatgtaaataacaaCGAATATATACAAAAGTATAATCGAACTGATCCTATTTATTCATCCTATGCCATAGAACAACAAAGGACAACTGAAGAACCATTAAACTTGACTAATAAAAACCGTAAAAGGTGCATGAGTGAAGTTGCCGAACCAATCGTTCAGAAGAGTTTAATAAAAGAATTGCTGTTAAAAAGCCTTTATTCCTCTGATATGCAATGCCCTTATTGTAAAATGATATTTCAAACAGTAACAGAATTAGATATACATAAGTATCGAAATTGCAAAGGTAAACCATCTGGGGCAAGATATACTAGAAGTAGCTCAGTTAATGTAGCATCAATTttaactcaaaataaaaatgcattcgATAACTTACCGCAATTACAAAACactatttttcctttaaattcaCCTGGACCATTTTTGGGGAAAACTCGTTTAGTAGATACCGATAAAAGTAAGTCGTTTTCATTTGACAGTGGCAACTTGCCATTGATGAGTCCTACCGAATTGCCACAAAATTACTTGTTATCACCTTTACCATttgacaaagaaaaaaaaacaccagtAAAATTATTTGGCGGAGaagtaaaaatacattcttCAGGAGAaacaaaaagtttcaaaatagataacaaagatgaTAAGTATGAATCAGAAGCCAATTATATAGATTATGGAGGGAAACTTAGTGAAAATAGAGTTATTAAGTCAAGTTTGCAGTCTGGTGGAAcagttttaacaaataaaacaaattataacaaaCAGGATTTAAGGATACCACAAGATGTAATAAGAGTTTATGAAAATACATCTGTTTCACCCAGTATAGATATTACTAGCTtaagtaaaactaaatttactTTTGATCATCAGTCCGATGGGATCTCAGACAACATGCAATCAGAGATAATGCGACATAGTTTAGGAGAATCAAATGAAACGGCAAAAACTTTTAGCAGTGTGTCTAGTCCTTTATATAAGTATActaatataatggattttagtCAAAAAGCTGTTAAAATGCTGACACCCAATATAAAACAACCAAATTTTTCAGTACCTGGAGTGCCTGttccaaataaattattttttaaccatCTAGTTGAAAATAAACCAGATCTGAATCCTAATAATTCAAAACCTATAACTGATGTTGAACCTAATACAAACAAACCGCAAAATTTGACTCTTAGttcagaaatagaaaataactgGAGAAATAATTCAGTGAAACAAcaacttatacaaaaaaaggtatCTCATGAACTTCAGTCAACTTCTAGTAGTAACTTGTATAATCCagttaatttattagtaaatggGAAAGTGGTACGCTATGTACCAGGAATGCCAGGCCCTATAGCAGCGGAAGGTCCCGTAGATATGGCTTATGAATGCAATATAGTAGCTGTTGGGAGACCAACTCAAAGAGAGTTGACACACGGTATGTCTATAGCTTTTGATAAAGTAAAACCTATACCAGAAACTCCAAAAACAAGTAAAACCAATGATTTTTTACAACCCGAAAAGGTAATTGAAAGGATAAATAGGTCTCCAAAATtggatattttagaaattaaaacCGACTTTCCTTCCAAGGCAGCTGAGATAAAATCATCAAGAATTAATGATTCGAAATCTCCAATAAAAACATTAGAAATGAAATCTCCAGATAATATTAATCTTGGTGAAACAAAGAAATTTGTTCGACCAAATAGTTTGGCTTTAAAGCCAACAACTGCTTCTTTGAAACAACACCATGGTTTAACTCCAACTATGTTTAACCAGATTCTCATTAGCCCTGATACACCACGTGTGGCAAAAAAATATGCTGAACACTTTTTGCATGGCAACTATTTTAGTTATTTGGGGTTAAAAAGTTCTACTAAGCCTGTTTATTgtactttaaataaaacacagcCATTTTACGTgccccattttaaaaaattaagtatgtaTTCTGAGTGGCGCCAACAAGATACGAAGACAGACAAACTATATGTTAGTAATTATGATTCACGACAGAAGAGTCAAAAATATACGATGTCTGGAAAAACAACTGCTAATTTGATTATCCATTCTAGTTACaagtttatgGTATCTGAGGTTACAACGGCTAAAGTTGAAAAAGATGATGATGTACAGAAGAATAATGCTCTTCTTGGGGGATATGAGTGTAATGAAGACTATACTTACATAAGAGGCAGAGGTCGAGGACGTTACGTATGTGATCAATGTGGAATTCGTTGTAAAAAGCCGTCAATGCTCAAAAAGCATATCAGAACACATTCTAATGATCGACCATACACTTGCAATCATTGCAATTTTAGttttaaaactaAAGGCAACTTGACAAAACATATGAAAAGTAAAGCTCACACCAAAAATTATACAGCCAGTAGTGGTTCTAGCTCTTCTACACAACAAAGTGCAACTCAGAGTTCAGAGTCAGAGACAGATGATAGTGGTATGGATAGTAGTGatgAATCTACACGACAGCAAGAACATGAGGCAGCTTATGGTTTGTTATCTTTATCACAAAAACCAACTAAAACCAGTACAACACATTCACAATCTGATATAGGTCTTCTACGGAGTAGTAGTCCTGTTTCAAATAATGATCTCTTTATGAGCACGGAAGAAATAGCATATGTGTCAAAAACAAGttatgctaaaaataaaatattagatgaacataattctttaagttttagtactactacaaaaaataatgagGTGACTACATTTGCAACTTCAGAAGAAACAGCCGAagcacaaaatataagaaattatttagGAAAATCTAGTGTAAATAGACCTTTAACTTATCCTTATACATCGGCTTTAAATGAAAGAGATGTTTTACCATCTAATAatacagaaattataaataGAGTTTCATGtaatgaaacagttttaaataatgttgagaGTAGTCCTGAGCCCAAGTGCATTAAACAGTTCCATGTGATACAAAAATATGCTGTGCCTCTAATGCAACCTTTATCTCCAAAAATATCTGTACCAGGAAGTCCTTCACAAGGCAGCCCACctccaaaaaaattagaaaatacatATAGTTCTCCTGAAAaaagtgttaataaataa
Protein Sequence: MESSVDSYLHKKFKKQLSIEPKPQNYDKENKGSARALESSEEKVIECKNQGECNKIVENQITIDNNEIVPNQSTNQNSSFVLNNSNFSKSSISIEKCIANQQSSNSCISYVISNHQTNEEHYKPVNFDTTFRTDPTNSTISVSSILDNLYSKQNYINKEDISSYNLQDDYSVKLNSADESSDTKTEEIQPPPDRNSSGKYVCTYCNLVCSKPSVLQKHIRAHTNERPYPCVSCGFSFKTRSNLYKHCRSRTHANRVLGNKSQESNNEMDNQNQKLLSLPRSPINHSENKEEKAISQDIKLKPYKPRFHTAKPFFENVAKENIEDERQNNKHATSDLLSHHINEIINKNNSIVNSSESTFIKKRFNDMIVDNVNNNEYIQKYNRTDPIYSSYAIEQQRTTEEPLNLTNKNRKRCMSEVAEPIVQKSLIKELLLKSLYSSDMQCPYCKMIFQTVTELDIHKYRNCKGKPSGARYTRSSSVNVASILTQNKNAFDNLPQLQNTIFPLNSPGPFLGKTRLVDTDKSKSFSFDSGNLPLMSPTELPQNYLLSPLPFDKEKKTPVKLFGGEVKIHSSGETKSFKIDNKDDKYESEANYIDYGGKLSENRVIKSSLQSGGTVLTNKTNYNKQDLRIPQDVIRVYENTSVSPSIDITSLSKTKFTFDHQSDGISDNMQSEIMRHSLGESNETAKTFSSVSSPLYKYTNIMDFSQKAVKMLTPNIKQPNFSVPGVPVPNKLFFNHLVENKPDLNPNNSKPITDVEPNTNKPQNLTLSSEIENNWRNNSVKQQLIQKKVSHELQSTSSSNLYNPVNLLVNGKVVRYVPGMPGPIAAEGPVDMAYECNIVAVGRPTQRELTHGMSIAFDKVKPIPETPKTSKTNDFLQPEKVIERINRSPKLDILEIKTDFPSKAAEIKSSRINDSKSPIKTLEMKSPDNINLGETKKFVRPNSLALKPTTASLKQHHGLTPTMFNQILISPDTPRVAKKYAEHFLHGNYFSYLGLKSSTKPVYCTLNKTQPFYVPHFKKLSMYSEWRQQDTKTDKLYVSNYDSRQKSQKYTMSGKTTANLIIHSSYKFMVSEVTTAKVEKDDDVQKNNALLGGYECNEDYTYIRGRGRGRYVCDQCGIRCKKPSMLKKHIRTHSNDRPYTCNHCNFSFKTKGNLTKHMKSKAHTKNYTASSGSSSSTQQSATQSSESETDDSGMDSSDESTRQQEHEAAYGLLSLSQKPTKTSTTHSQSDIGLLRSSSPVSNNDLFMSTEEIAYVSKTSYAKNKILDEHNSLSFSTTTKNNEVTTFATSEETAEAQNIRNYLGKSSVNRPLTYPYTSALNERDVLPSNNTEIINRVSCNETVLNNVESSPEPKCIKQFHVIQKYAVPLMQPLSPKISVPGSPSQGSPPPKKLENTYSSPEKSVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01290834;
90% Identity: -
80% Identity: -