Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: -
Assembly: GCA_029963845.1
Location: JANEYF010003148.1:27955-46705[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00038 0.078 15.5 1.7 1 23 425 447 425 447 0.98

2 12 0.049 10 8.8 3.7 1 23 455 477 455 477 0.98

3 12 0.011 2.3 10.9 2.2 1 23 486 508 486 508 0.98

4 12 0.01 2.1 11.0 1.4 1 23 517 539 517 539 0.97

5 12 0.00042 0.087 15.3 3.3 1 23 548 570 548 570 0.98

6 12 0.0009 0.19 14.3 2.8 1 23 579 601 579 601 0.98

7 12 0.025 5.1 9.8 5.3 1 23 610 632 610 632 0.98

8 12 0.24 50 6.7 2.9 1 23 637 659 637 659 0.96

9 12 0.025 5.2 9.7 5.4 1 20 671 690 671 694 0.93

10 12 0.0027 0.55 12.8 5.2 1 23 700 722 700 722 0.99

11 12 0.0031 0.64 12.6 4.1 1 23 731 753 731 753 0.99

12 12 0.67 1.4e+02 5.3 5.2 1 23 759 781 759 782 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00038	0.078	15.5	1.7	1	23	425	447	425	447	0.98
2	12	0.049	10	8.8	3.7	1	23	455	477	455	477	0.98
3	12	0.011	2.3	10.9	2.2	1	23	486	508	486	508	0.98
4	12	0.01	2.1	11.0	1.4	1	23	517	539	517	539	0.97
5	12	0.00042	0.087	15.3	3.3	1	23	548	570	548	570	0.98
6	12	0.0009	0.19	14.3	2.8	1	23	579	601	579	601	0.98
7	12	0.025	5.1	9.8	5.3	1	23	610	632	610	632	0.98
8	12	0.24	50	6.7	2.9	1	23	637	659	637	659	0.96
9	12	0.025	5.2	9.7	5.4	1	20	671	690	671	694	0.93
10	12	0.0027	0.55	12.8	5.2	1	23	700	722	700	722	0.99
11	12	0.0031	0.64	12.6	4.1	1	23	731	753	731	753	0.99
12	12	0.67	1.4e+02	5.3	5.2	1	23	759	781	759	782	0.96

Sequence Information

Coding Sequence: ATGTCTGGTATAAACACGTTTTACATTTGTACACTGGTACAACTGGAAAAGTCTGATGGACCAGCATGTGTCTCTTCAAATTACCTTTACATTTTGTCAGttcACTATATTTTAGATGTAGACCAAGTAAAAAAGAATCTTTTTGAGGATTTAGCTACTGTAAAAGATGATGGTTCTCAAATTGCTGCTCATTGTAGTGAAATTAAAGTATACAATTCAGCGGGAAACTTGATTCCACATTTGAAAGAGGATAAACAAAATCCAAAAATAAACTtcataaaaagaaatgttgatgaGAATGAAATTACCTATTCAAAACAATTAGATATCCCTACAACTTCCAAAATTATCGATCTTTCTCTAGAAAATACTGCATTTGAAGGAGGATCCTCGGACGAATATATTTCATCTGCACATAGCGACAGCAGTGATACTTCTGAAAATCTCAATTTAATTGAATATAGAAAAggaatatacagaaaaaaaacaaaATTTTGTCTAACATACTGCAATGAATTCTGCGCTATAGAAGAAATTACAAGACAAATGTTGGAAGCACTTCTGAACCTAaatttgGGATTAGACAAGGGAATTGAGATGTGTACTGAGTGCGCAAGAAAACTTCAAATTGCCTATGATTTTAAATCAACTTGTGTTAATATAGAGAAGAAGATAATACCTCTCTTCACTTCTAAAGAAAATGTAAAGTTAAGTGAGGATAGTtcgaaacaaaatacaaatttagaaTTGCTTGATGGTTGTGAGAAGCAGAGGATATGTCGATTTTGTATGAAAGTGACAGAAAGTGGACGCCATGTTGTTTTACAGGAAAAggaacatatatttatattagatgtggtacaaaaatatatcccTGAATTAcaTATAAGTGATACCGAAGAAATAGTATCTTGTGAGGTATGCCTTATTGCATTACAgagttttatcagttttataaTGGACTGCCTGAATGTGAtggaaaaaacacaaaatatgtatGAAAGTGCTAAAAGTCAGTTAGAATTGAATGATATAAAagtatttgatttgaaacacGAGATAGACGATGATAATATCGCAATGGAAAAAaagtatgatttaaaaaatgaagatgtGTTGGAATTGGGTAATCCAGAGCTGCTTATCAAAAATGAAGAAACTGAAAGttttcaagATACAGCTTCTGCGACACAtctgaatttgaaaaataatgaaacgtGTAAGAGAACTGTCAAAGAACACACCAGTCAAGGCATTTCAGGAGTAAAAGTGTACAAATGTGAAAGGTGTTCATTCAGTGCAAACCGTAAATATCAACTGACACAGCACATGTTGATCCACGAAAACATTTCAGAAATAACATACAAATGTGAAACATGTGCGTACCTGACAAAATGTAAAAGTAATTTGAAGAGACACATGCTGGTCCATCAGAATTTTCCAGCTGTACCAGTGTATAAATGTAAAACGTGTTTATACCAGACATATTTAAAAGGTAGTCTTAAAAAGCATATGCTGATCCATCAGGATGTTTCGGATGTAACAATATATGTGTGTGAAAGTTGTTCATTCCAGACGAAATATAAAAGTAGTCTTAAAGTACACTTGCTGAATCATCAGAATCTATCAGATGTAACGGTAcacaaatgtgaaatttgttcatACCAGACAAAATATAATGATTATCTTAAAAAGCACATGCTGATCCATCAGAATCTTTCAGATGTAACAACATACACTTGTGAGACGTGTTCGTACCagactaaatttaaaagaaatcttAAGAGTCACATGCTGATTCATCAAGATCCTTTCGATGTAACACTACATAAATGTGAAACATGTTCGTTtcagacaaaatttaaacaaagtcTTAAAAAGCACATGTTGATCCACCAAGATCCACTATACAAGTGTGAAACGTGTTCGTACCAGACAATATATAAACAGTCATTTGAAAAGCATAATATGCAGCATATTATGCTGATCAGTCTTTCAGATGTAACAGTATACAAATGTGAAATGTGTTCATATCACACGAAATTTAAACGAAATCTTAAAAGGCACCTGCCGATCCATCATTTAGATGTAACAGAATACAAGTGTGAAACTTGTTCATtccatacaaaatataaacgaaaTCTAAAAAGTCACATGTTAATTCATAAAGATCTTTTCGATGTAACACTATACAAGTGCGAAACGTGTTTGTATCAGACGAAATTTAAACGAAGTCTTAAAAAGCACATGTTGACTCATCAGAAGCTCCCAATATTCAAGTGTGAGACATGTTCATATGAGACAGAATTAAAACATCGTCTTAAATACCACATGTTGGTACATCACGGTCCTCCAGATGTAGCCAACACCACCTAA
Protein Sequence: MSGINTFYICTLVQLEKSDGPACVSSNYLYILSVHYILDVDQVKKNLFEDLATVKDDGSQIAAHCSEIKVYNSAGNLIPHLKEDKQNPKINFIKRNVDENEITYSKQLDIPTTSKIIDLSLENTAFEGGSSDEYISSAHSDSSDTSENLNLIEYRKGIYRKKTKFCLTYCNEFCAIEEITRQMLEALLNLNLGLDKGIEMCTECARKLQIAYDFKSTCVNIEKKIIPLFTSKENVKLSEDSSKQNTNLELLDGCEKQRICRFCMKVTESGRHVVLQEKEHIFILDVVQKYIPELHISDTEEIVSCEVCLIALQSFISFIMDCLNVMEKTQNMYESAKSQLELNDIKVFDLKHEIDDDNIAMEKKYDLKNEDVLELGNPELLIKNEETESFQDTASATHLNLKNNETCKRTVKEHTSQGISGVKVYKCERCSFSANRKYQLTQHMLIHENISEITYKCETCAYLTKCKSNLKRHMLVHQNFPAVPVYKCKTCLYQTYLKGSLKKHMLIHQDVSDVTIYVCESCSFQTKYKSSLKVHLLNHQNLSDVTVHKCEICSYQTKYNDYLKKHMLIHQNLSDVTTYTCETCSYQTKFKRNLKSHMLIHQDPFDVTLHKCETCSFQTKFKQSLKKHMLIHQDPLYKCETCSYQTIYKQSFEKHNMQHIMLISLSDVTVYKCEMCSYHTKFKRNLKRHLPIHHLDVTEYKCETCSFHTKYKRNLKSHMLIHKDLFDVTLYKCETCLYQTKFKRSLKKHMLTHQKLPIFKCETCSYETELKHRLKYHMLVHHGPPDVANTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -