Rbic026324.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010002186.1:1559557-1571765[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00037 0.077 15.5 1.6 1 23 247 270 247 270 0.95 2 10 3.2 6.7e+02 3.1 0.1 2 19 293 312 292 314 0.89 3 10 0.25 52 6.6 0.2 1 11 324 334 324 337 0.91 4 10 5.8 1.2e+03 2.3 0.1 1 8 354 361 354 377 0.70 5 10 8e-05 0.016 17.6 0.3 1 23 383 405 383 405 0.92 6 10 0.00015 0.031 16.7 2.1 2 23 419 441 419 441 0.97 7 10 0.00013 0.027 16.9 0.8 1 23 447 469 447 469 0.97 8 10 0.021 4.2 10.0 5.9 1 23 475 497 475 497 0.98 9 10 0.00035 0.073 15.6 3.2 1 23 503 525 503 526 0.96 10 10 0.0024 0.49 13.0 2.4 1 23 533 555 533 555 0.98
Sequence Information
- Coding Sequence
- ATGGATACTGAGGATGAATCGACGGCATATTTGAAGTACCTTAATGATCCCACTACTCCAAATAACTATTTGCTAAGTAATGAAGTTGAGCTTACAGATTCATTTCCATTTGCTGAAATAGAGACAGCTGATTGGCCTCCTGAAGGATTCCCTGTTCTCTTAAGCAGTCCTTTAATTACAGAAGAATGTAATGCTACTACAGTCACTGATAATATTCAACTATTTAATGAGGAAACAACTGTAATACAAACTAATTTGAAAGAACAAGAAATTGAACTTCTACAGACCTcaaagataaataaattgccCTCTGGGCACATACTTCATTCCTACTTGCCAATAAAAGGAAAAGCAAATGGTACTGGTCAtagatcaattaaaaaaacctaTATAAACTATGCTCCTATTGTTAAGGAAGATCTTGATGgcaataaagaaatttatttaacggAAAAGGATATAAACAATGATGCTAGTATAATACAGTTATTTAACACAGACGGTAGTATAATAACCATAGATAAGTCAATTCTTAGTTCTCttaatttgccaaaaaaaacgCTAAAAAAATGTGGTGTTTGTAATTTCTTGTGTGAAGCAGATGATGAAATTAAGAatcatttaaatgaaattcatCCAGAATTGTTTCATGAACAAAATGTTGCAGCAAGGAAAGAACAGCATGAGTCcacatcaattttaaaaaataataatgaagaaaataaagaatatactatatttttatgtagtATTTGCAAACTGGCTTGTTCAGATAAAAACGAATTAAAAGAACACATGATAACCAAACATGAGTTGACCACATCTAATAATGATTTGAAACCAATGGAAGAGAAAGAAAAAGCTAGAAAAAAAGTGAAATGTTCGATTAAGGGTTGTAATCTACGTTTTGCCAGGGATGAATTAAGACAGCGACATGAGGAGTGTCACGTTGGTGAAAACAAAAAGCAGTTCAGATGCAATCAGTGTGATGAACGATTTTCTATTTGGAGAATATGCAGCAACCATTTGTGGAAATGTCACAAAATTGATTTAGGACTGTTTACTTGCCCAATGTGCAATATGTTTAAATCTAATAGTTcaatcaggGTACTAAATCATATGGCTATACATAATGAGGAAAAACCGTTTTTATGTAGTGATTGTGGGAAAGGATTTAAAACGATGGTCCAGTTAAAAAATCATGAGGTGATCCATAAAAAACCTGAAGATttacctAACTGGTCTGTCATGAGACAATGTGAAATTTGTGAGCGTTATTTTGCCAATTCTAAATGTTTGAAGAAACATATTCAGTCCGTCCATGAGCATTTCAAACcatttatttgcaatatttgtgGACACAAAACTGCCAGAAAAGCAATGCTGGAGTTACATTTACGACAGCATACTGGAGCCAAACCTCATGAGTGTCCTTATTGTGAATACAGGACTGGCGATCATAACTGCCTAAGGAAACATATCATGAGACATATTGGTgccAAAAAATACCGCTGCCCACACTGCCCTTATACATCTATCCAAAGTGCTTCGTATAAAAGTCACATAAATAATCACCATCCTGGAAAGAGTGGAACTTACAGTTGTAGCTATTGTTCTTATACTTGTATAAATTTAGCTGACTATTCAGCTCATCTGAAACGGCATGAGGCAGCTTCAAAAGAAAGTGgtAAAGAACTAACTGAACAAAATGAAGTTGTTAATCATACCAATAACAGATATTTATATACGacTGATGCTGAAGATGATGAAACCCAAAACTGTTTTCTCAACACCGATCATGCCATAGAGGAAACTGTCGATACAGGTGGAATAACAATACCAGCTGGTTTAGAAATGCAGTTGGTATCTTAA
- Protein Sequence
- MDTEDESTAYLKYLNDPTTPNNYLLSNEVELTDSFPFAEIETADWPPEGFPVLLSSPLITEECNATTVTDNIQLFNEETTVIQTNLKEQEIELLQTSKINKLPSGHILHSYLPIKGKANGTGHRSIKKTYINYAPIVKEDLDGNKEIYLTEKDINNDASIIQLFNTDGSIITIDKSILSSLNLPKKTLKKCGVCNFLCEADDEIKNHLNEIHPELFHEQNVAARKEQHESTSILKNNNEENKEYTIFLCSICKLACSDKNELKEHMITKHELTTSNNDLKPMEEKEKARKKVKCSIKGCNLRFARDELRQRHEECHVGENKKQFRCNQCDERFSIWRICSNHLWKCHKIDLGLFTCPMCNMFKSNSSIRVLNHMAIHNEEKPFLCSDCGKGFKTMVQLKNHEVIHKKPEDLPNWSVMRQCEICERYFANSKCLKKHIQSVHEHFKPFICNICGHKTARKAMLELHLRQHTGAKPHECPYCEYRTGDHNCLRKHIMRHIGAKKYRCPHCPYTSIQSASYKSHINNHHPGKSGTYSCSYCSYTCINLADYSAHLKRHEAASKESGKELTEQNEVVNHTNNRYLYTTDAEDDETQNCFLNTDHAIEETVDTGGITIPAGLEMQLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290805;
- 90% Identity
- -
- 80% Identity
- -