Rbic003900.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010000334.1:1285978-1294376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0024 0.5 12.9 0.1 2 20 280 298 279 300 0.93 2 9 0.075 15 8.3 1.7 2 23 308 330 307 330 0.92 3 9 3e-05 0.0063 18.9 1.1 2 23 338 360 337 360 0.97 4 9 4.5e-06 0.00093 21.5 0.5 1 23 367 389 367 389 0.98 5 9 1.4e-06 0.00028 23.2 0.6 2 23 397 418 396 418 0.97 6 9 0.00064 0.13 14.8 0.8 1 23 424 446 424 446 0.98 7 9 2.5 5.1e+02 3.5 1.7 1 23 452 474 452 474 0.89 8 9 7.6e-05 0.016 17.7 0.4 3 23 482 502 481 502 0.96 9 9 0.023 4.8 9.9 0.8 2 23 507 529 506 529 0.94
Sequence Information
- Coding Sequence
- ATGagttacataataaaattaggagatattaaaaatagatgCAGAATATGTTTAACGTTAAGCAATAACATGATCTCTCTTAATCATAAATTAGATGATTGTGAAAGCAGTCCTTCAATATTTGCCGCTATGGAAAGTATATTTTCAACACAgataaatgACGACTTTGATTATCCTACCAAAGTTTGCCAAATATGCCATGGGCATATTAGGATATggtatgatttaaaaataatcttcaaTCAATCTCAAAACATTTTACAGAGATATGTATCACTTGAAGAAAAAGATTTAGACAGTTTAGGAAATTCTTCTCATTTAGCAGAATTGTTaaatagtttacaaaaaaagactATGGTGGTGGGTTCAGCATTGCCAGATTTACAGAATGTGGACATTTCACACAATAATTTGGTTGCACTGGATGACACGAGTGAATCACAAGAAACTTCACGTGGCCGTATTATGCAGAACAAAATTATAGaagtgtcaaaaataaaattccaattAAAATCGTTAAAAGGCAATAAATTGACAATAGGAAAAGATCAAAACATTGCAAAGGAAAAATCTATCTATTTAGAAGACCAGTTAGATAGTTCAAAAGATGAAAATAATAGTTTGTTGGCAGCATTACCAAATTTATGTAGTATGAAATCTGGTAATTTGGTAATGATGAATGCCTCGATAACAGCACACAAGGATTcacataaatctaataatggACCTACAGAATTATTAACTGGAAGCAATGAAGCAATaaaatttgacagaaaaatgtttgaaggCGATCAATTTATAATAGAAGAAGATTTGAACTTTCCAAAAATGGTTCTTAAATGTTCCTATTGCCAAGAAGAATTTATTTCGAATGAAAAACTTGCACAACATTTGGCTGTTTGTAATCGATTTGCATTAATAAAGTGTGACTTTTGTAACAGAAACTTTTCTTCTTCAGCAAGCAAGGCATTTCATATGAAGATGAAGCATGTTCCTATTCAACCtgaaataaaatgtgaaatttgtaatCTGGTATTCAAGAATAGTAGAACACTAGTTTATCATCAAAAAACTAAGCATAATGCAAAAGGAAAGACGTTTGTGTGTGAATTATGtggaaaatcattttatttaaaaaatggcttAACTCAACATATGGATACCCACAATAAAGCTGTATCGAAAGTCGTCTGTCCCATATGTGGGAAAAGTTTCCACTATAAAGgcGCACTTTTCTACCACATGAAAATGCATACAAATGAGAAAAACTACCCATGCACTTTGTGTACgaggaaatttttaaatatatccgcATTGAAAAAACATGCACGGACCCATACTGGTGAACGTCCATATCCATGCAAATTCTGTATAAAAACTTTTCGTTCAACAGGCATCCGCAATAACCATGAAAAAACCCACACTGGTgtaaaatctaatttttgtaaatactgtAAGAAAGGTTTTATCACACTCTACAGTCTTAAGGTTCATATTGCTGCACATAAAGGAACTCAACCTTGTGATGTTTGTAAgaggacatttttaaatagtgaagTGCTTAAGTTACACATGAAATTCAAACATGATACTAAAGATGACATGAGCAAGATTGACgacaatatataa
- Protein Sequence
- MSYIIKLGDIKNRCRICLTLSNNMISLNHKLDDCESSPSIFAAMESIFSTQINDDFDYPTKVCQICHGHIRIWYDLKIIFNQSQNILQRYVSLEEKDLDSLGNSSHLAELLNSLQKKTMVVGSALPDLQNVDISHNNLVALDDTSESQETSRGRIMQNKIIEVSKIKFQLKSLKGNKLTIGKDQNIAKEKSIYLEDQLDSSKDENNSLLAALPNLCSMKSGNLVMMNASITAHKDSHKSNNGPTELLTGSNEAIKFDRKMFEGDQFIIEEDLNFPKMVLKCSYCQEEFISNEKLAQHLAVCNRFALIKCDFCNRNFSSSASKAFHMKMKHVPIQPEIKCEICNLVFKNSRTLVYHQKTKHNAKGKTFVCELCGKSFYLKNGLTQHMDTHNKAVSKVVCPICGKSFHYKGALFYHMKMHTNEKNYPCTLCTRKFLNISALKKHARTHTGERPYPCKFCIKTFRSTGIRNNHEKTHTGVKSNFCKYCKKGFITLYSLKVHIAAHKGTQPCDVCKRTFLNSEVLKLHMKFKHDTKDDMSKIDDNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -