Rbic051203.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010004235.1:889539-891264[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0033 0.68 12.5 7.3 1 23 144 166 144 166 0.96 2 13 3.2 6.6e+02 3.1 2.2 2 19 174 191 173 194 0.91 3 13 0.00068 0.14 14.7 7.0 3 23 220 240 218 240 0.96 4 13 7.9e-05 0.016 17.6 1.7 1 23 246 268 246 268 0.92 5 13 5e-08 1e-05 27.7 1.1 1 23 272 295 272 295 0.98 6 13 5.2 1.1e+03 2.5 0.5 5 21 306 322 305 323 0.90 7 13 0.0054 1.1 11.8 1.5 1 19 329 347 329 350 0.88 8 13 0.093 19 8.0 0.1 2 20 358 376 357 378 0.93 9 13 4.5 9.3e+02 2.7 0.1 2 19 390 406 390 407 0.76 10 13 3.1e-06 0.00064 22.1 4.1 1 23 427 449 427 449 0.98 11 13 0.0002 0.041 16.4 2.1 1 23 454 476 454 476 0.97 12 13 0.00081 0.17 14.4 2.9 2 23 483 503 482 503 0.87 13 13 9.4e-08 1.9e-05 26.8 0.7 1 23 509 531 509 531 0.99
Sequence Information
- Coding Sequence
- atgaacCAATCAAATATTCTTTATGAagattttgataatatttgtaGGCTTTGTTTATGTGCTACTGaattaaaatctattttttccAATCCAAAACTCATaactacatttaaatatataacgAACGTTAAGaTAAAAGAAAATGACAAACTTCCTAAAAACATCTGCACTAATTGTATTCAAAAATTGGAAGATCTCTCTTCCTTCATAgaaacatgtaaaaataatgacGCTCTTCTAAAATCCATCATATTTCAAAAGGAAGATGAAAGTTTAGTTTCACAAAAATCTGAATTAATTGACTCTACTTTAGAAATTGATTCGGTAGAAGAAATTCATGTCAAAGTGGAGGGCAACGAAAATGAAGAAGATAACATAATCACTTTGAAAATTGTCAAAGAAGCAAAAccaaatgatgaaaataaaatATTTCCTTGCAaacaatgcaataaaaaattttgcaaactaaCACATTTAAAACTACATGTTTATAGCCACAAAAGATGTATCAAAGCTCTATGCTGTGAGAAGtgtaatacacaatttttaacaGTGAGTGCTTTAGCAAGGCATAGTTGCTTAGTctcaaaaaaactgtttaaatctACCAATGGCAAAAAAGAGGAAAACGGAAAGAAAAGAAATGATATGTGCTTATGCATGTactgcaataaatttttaacaagaaAAAGTGATTTGCAAAGACATCTTTGCACTCATACTGGCATTAAGGCCTTTAACTGTGATGTGTGTCGCAAAAAGTTCTCGCAAAAGAGTGCTTTAGTTCGGCACAGCTTTCTTCACACCGAAAAATTCAAATGCGATGATTGCGGTAAACCATTTACTAGGGATAGTCAGTTGCAAAACCATATAAAGAAGCaacatgatataaaaaataagagtgGTATGAATTCtacttgtttatataaatttaaatcaaaatcatgTATAGAGGATCACTTGAAGTTAATGAACAAATCCGATTTTAAATGTGTTATATGCAACAAAGTTTTTGCATCAAAAGGTTCATTGTATTGTCACTATTTGAGTCCTACCCAAATAAAAGAGGTTAAATGCGATAAATGCGAAGGTGAATTTAGCCTCAATTCTTTGTTAATACAACACAAACTGTCTAAAGAAGGAAATTTAGTAGAGAAATTTGAGCCAACATGTCCAGAATGTGGAAACGATTTTCTCATATCGAGTCTCATACAACATaatccaaacaaaataaaaatacataaaccaaAGTTAAAAAGTGCTTCTGCAGCACAGGGGTTCAATTGTTCATATTGTGGCAAAATTTTCTCTTACAAGTGCAATTTAAAGGTACACCTTAGTACACACACTGGAGCACGCTTCTCATGTGAATTATGTAAAAACAGTTATTCAACAAAAGAGTCTCTCAAACACCATATCTTAGCCCATAAAGGAGAGACACCGTGTACGTGTCCTTACTGTGGTAAACAATTTCGTAAACCTAGTTACTACAAACATCTCTTAATTCACAAAGGAGAGAGACGATATGAATGCAACATCTGTAAAAAAGGGTTTATTCGAAAAGATCAGTTAAACCAGCATCTGCGGGTACACAAAACTTAA
- Protein Sequence
- MNQSNILYEDFDNICRLCLCATELKSIFSNPKLITTFKYITNVKIKENDKLPKNICTNCIQKLEDLSSFIETCKNNDALLKSIIFQKEDESLVSQKSELIDSTLEIDSVEEIHVKVEGNENEEDNIITLKIVKEAKPNDENKIFPCKQCNKKFCKLTHLKLHVYSHKRCIKALCCEKCNTQFLTVSALARHSCLVSKKLFKSTNGKKEENGKKRNDMCLCMYCNKFLTRKSDLQRHLCTHTGIKAFNCDVCRKKFSQKSALVRHSFLHTEKFKCDDCGKPFTRDSQLQNHIKKQHDIKNKSGMNSTCLYKFKSKSCIEDHLKLMNKSDFKCVICNKVFASKGSLYCHYLSPTQIKEVKCDKCEGEFSLNSLLIQHKLSKEGNLVEKFEPTCPECGNDFLISSLIQHNPNKIKIHKPKLKSASAAQGFNCSYCGKIFSYKCNLKVHLSTHTGARFSCELCKNSYSTKESLKHHILAHKGETPCTCPYCGKQFRKPSYYKHLLIHKGERRYECNICKKGFIRKDQLNQHLRVHKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -